Evidence map›Paper›PMID 29028794›Full record

ArticlePLoS genetics2017

Condensin II and GAIT complexes cooperate to restrict LINE-1 retrotransposition in epithelial cells.

Jacqueline R Ward, Kommireddy Vasu, Emily Deutschman, Dalia Halawani, Peter A Larson, Dongmei Zhang, Belinda Willard, Paul L Fox, John V Moran, Michelle S Longworth

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
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  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Condensin action and compaction.Current genetics · 2019
    Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jacqueline R WardDepartment of Cellular and Molecular Medicine, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, United States of America.
Kommireddy VasuDepartment of Cellular and Molecular Medicine, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, United States of America.ORCID http://orcid.org/0000-0002-7608-7566
Emily DeutschmanDepartment of Cellular and Molecular Medicine, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, United States of America.
Dalia HalawaniDepartment of Cellular and Molecular Medicine, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, United States of America.
Peter A LarsonDepartment of Human Genetics, University of Michigan School of Medicine, Ann Arbor, MI, United States of America.ORCID http://orcid.org/0000-0002-1490-150X
Dongmei ZhangProteomics Core, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, United States of America.
Belinda WillardProteomics Core, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, United States of America.
Paul L FoxDepartment of Cellular and Molecular Medicine, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, United States of America.ORCID http://orcid.org/0000-0002-6033-1528
John V MoranDepartment of Human Genetics, University of Michigan School of Medicine, Ann Arbor, MI, United States of America.
Michelle S LongworthDepartment of Cellular and Molecular Medicine, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, United States of America.ORCID http://orcid.org/0000-0002-1313-1777
Cleveland Clinic Lerner College of Medicine · USUniversity of Michigan · US

Funding

Vascular Cell function and AtherosclerosisP01HL029582 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI FOX, PAUL L · 1985 to 2019
$32.0M
PREDOCTORAL TRAINING IN GENETICST32GM007544 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORAN, JOHN V. · 1985 to 2022
$11.3M
Gen. &Mol. Analysis of Human LINE-1 RetrotranspositionR01GM060518 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORAN, JOHN V. · 1999 to 2024
$4.8M
Condensin-mediated genome organization and transcriptional regulationR01GM102400 · NIGMS · CLEVELAND CLINIC LERNER COM-CWRU · PI LONGWORTH, MICHELLE S · 2012 to 2016
$1.5M
Mechanisms and Regulation of Programmed Translational ReadthroughR01GM115476 · NIGMS · CLEVELAND CLINIC LERNER COM-CWRU · PI FOX, PAUL L · 2016 to 2019
$1.2M
LTQ-Orbitrap Velos instrumentS10RR031537 · NCRR · CLEVELAND CLINIC LERNER COM-CWRU · PI WILLARD, BELINDA BELLE · 2011 to 2011
$600k
Spinning Disk Confocoal MicroscopeS10RR026820 · NCRR · CLEVELAND CLINIC LERNER COM-CWRU · PI DRAZBA, JUDY · 2010 to 2010
$500k
NCRR NIH HHS S10 RR026820NCRR NIH HHS S10 RR031537NHLBI NIH HHS P01 HL029582NIGMS NIH HHS R01 GM060518NIGMS NIH HHS R01 GM102400NIGMS NIH HHS R01 GM115476NIGMS NIH HHS T32 GM007544
6 · The paper itself

Abstract

LINE-1 (L1) retrotransposons can mobilize (retrotranspose) within the human genome, and mutagenic de novo L1 insertions can lead to human diseases, including cancers. As a result, cells are actively engaged in preventing L1 retrotransposition. This work reveals that the human Condensin II complex restricts L1 retrotransposition in both non-transformed and transformed cell lines through inhibition of L1 transcription and translation. Condensin II subunits, CAP-D3 and CAP-H2, interact with members of the Gamma-Interferon Activated Inhibitor of Translation (GAIT) complex including the glutamyl-prolyl-tRNA synthetase (EPRS), the ribosomal protein L13a, Glyceraldehyde 3-phosphate dehydrogenase (GAPDH), and NS1 associated protein 1 (NSAP1). GAIT has been shown to inhibit translation of mRNAs encoding inflammatory proteins in myeloid cells by preventing the binding of the translation initiation complex, in response to Interferon gamma (IFN-γ). Excitingly, our data show that Condensin II promotes complexation of GAIT subunits. Furthermore, RNA-Immunoprecipitation experiments in epithelial cells demonstrate that Condensin II and GAIT subunits associate with L1 RNA in a co-dependent manner, independent of IFN-γ. These findings suggest that cooperation between the Condensin II and GAIT complexes may facilitate a novel mechanism of L1 repression, thus contributing to the maintenance of genome stability in somatic cells.

Indexed as

Adenosine TriphosphatasesCell Cycle ProteinsDNA-Binding ProteinsEpithelial CellsGenome, HumanHumansInterferon-gammaInterferon-Stimulated Gene Factor 3Long Interspersed Nucleotide ElementsMultiprotein ComplexesNuclear ProteinsProtein BindingProtein Synthesis InhibitorsRetroelementsRNA, MessengerAdenosine TriphosphatasesCell Cycle Proteinscondensin complexesDNA-Binding Proteinsgamma interferon activation factorInterferon-gammaInterferon-Stimulated Gene Factor 3Multiprotein ComplexesNCAPD3 protein, humanNCAPH protein, humanNuclear ProteinsProtein Synthesis InhibitorsRetroelementsRNA, Messenger

Identifiers

PMID29028794
PMCPMC5656329
OpenAlexW2762958305

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.