ArticleThe ISME journal2018
Temporal dynamics of uncultured viruses: a new dimension in viral diversity.
Article in The ISME journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
28 citing papers in PubMed.
- Exploring the ecological drivers of bacteriophage diversity and functional viral potential in the skin of the axolotl Ambystoma altamirani.FEMS microbiology ecology · 2026Article
- Editorial for the Special Issue "Advances in Viral Metagenomics".Microorganisms · 2026Article
- Viromics approaches for the study of viral diversity and ecology in microbiomes.Nature reviews. Genetics · 2026Review
- The dynamics of single stranded, positive sense RNA bacteriophages in the rumen virome.Scientific reports · 2025Article
- Identification and profiling of novel metagenome assembled uncultivated virus genomes from human gut.Virology journal · 2025Article
- Discovering and exploring the hidden diversity of human gut viruses using highly enriched virome samples.bioRxiv : the preprint server for biology · 2024Article
- A Tale of Two Seasons: Distinct Seasonal Viral Communities in a Thermokarst Lake.Microorganisms · 2023Article
- The Viral Fraction Metatranscriptomes of Lake Baikal.Microorganisms · 2022Article
- Article
- Viral diversity is linked to bacterial community composition in alpine stream biofilms.ISME communications · 2022Article
- Interactions between bacterial and phage communities in natural environments.Nature reviews. Microbiology · 2022Review
- Distributions and relationships of virio- and picoplankton in the epi-, meso- and bathypelagic zones of the Amundsen Sea, West Antarctica during the austral summer.Frontiers in microbiology · 2022Article
- Novel Freshwater Cyanophages Provide New Insights into Evolutionary Relationships between Freshwater and Marine Cyanophages.Microbiology spectrum · 2021Article
- Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions.The ISME journal · 2021Article
- Role of Phylogenetic Structure in the Dynamics of Coastal Viral Assemblages.Applied and environmental microbiology · 2021Article
- Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics.Microorganisms · 2021Article
- Metaviromics coupled with phage-host identification to open the viral 'black box'.Journal of microbiology (Seoul, Korea) · 2021Review
- Interannual dynamics, diversity and evolution of the virome inVirus evolution · 2021Article
- Genomic Characterization of a Novel Freshwater Cyanophage Reveals a New Lineage of Cyanopodovirus.Frontiers in microbiology · 2021Article
- Seasonal and diel patterns of abundance and activity of viruses in the Red Sea.Proceedings of the National Academy of Sciences of the United States of America · 2020Article
Corrections and comments
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Recent work has vastly expanded the known viral genomic sequence space, but the seasonal dynamics of viral populations at the genome level remain unexplored. Here we followed the viral community in a freshwater lake for 1 year using genome-resolved viral metagenomics, combined with detailed analyses of the viral community structure, associated bacterial populations and environmental variables. We reconstructed 8950 complete and partial viral genomes, the majority of which were not persistent in the lake throughout the year, but instead continuously succeeded each other. Temporal analysis of 732 viral genus-level clusters demonstrated that one-fifth were undetectable at specific periods of the year. Based on host predictions for a subset of reconstructed viral genomes, we for the first time reveal three distinct patterns of host-pathogen dynamics, where the viruses may peak before, during or after the peak in their host's abundance, providing new possibilities for modelling of their interactions. Time series metagenomics opens up a new dimension in viral profiling, which is essential to understand the full scale of viral diversity and evolution, and the ecological roles of these important factors in the global ecosystem.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.