Evidence map›Paper›PMID 29026902›Full record

ArticleOrganic & biomolecular chemistry2017

Exploring the origins of selectivity in soluble epoxide hydrolase from Bacillus megaterium.

Eila Serrano-Hervás, Marc Garcia-Borràs, Sílvia Osuna

Open access · hybridAbstract read
In one paragraph

Article in Organic & biomolecular chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 14 citations in OpenAlex.

  1. Why Monoamine Oxidase B Preferably MetabolizesInternational journal of molecular sciences · 2022
    Article
  2. Article
  3. Role of conformational dynamics in the evolution of novel enzyme function.Chemical communications (Cambridge, England) · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Eila Serrano-HervásInstitut de Química Computacional i Catàlisi (IQCC) and Departament de Química, Universitat de Girona, Carrer Maria Aurèlia Capmany 69, 17003 Girona, Spain. silvia.osuna@udg.edu.ORCID http://orcid.org/0000-0002-9477-0350
Marc Garcia-BorràsDepartment of Chemistry and Biochemistry, University of California, Los Angeles, 607 Charles E. Young Drive East, Los Angeles, CA 90095, USA. marcgbq@gmail.com.ORCID http://orcid.org/0000-0001-9458-1114
Sílvia OsunaInstitut de Química Computacional i Catàlisi (IQCC) and Departament de Química, Universitat de Girona, Carrer Maria Aurèlia Capmany 69, 17003 Girona, Spain. silvia.osuna@udg.edu.ORCID http://orcid.org/0000-0003-3657-6469
Universitat de Girona · ESUniversity of California, Los Angeles · US

Funding

European Research Council 679001
6 · The paper itself

Abstract

Epoxide hydrolase (EH) enzymes catalyze the hydration of racemic epoxides to yield their corresponding vicinal diols. These enzymes present different enantio- and regioselectivity depending upon either the substrate structure or the substitution pattern of the epoxide ring. In this study, we computationally investigate the Bacillus megaterium epoxide hydrolase (BmEH)-mediated hydrolysis of racemic styrene oxide (rac-SO) and its para-nitro styrene oxide (rac-p-NSO) derivative using density functional theory (DFT) and an active site cluster model consisting of 195 and 197 atoms, respectively. Full reaction mechanisms for epoxide ring opening were evaluated considering the attack at both oxirane carbons and considering two possible orientations of the substrate at the BmEH active site. Our results indicate that for both SO and p-NSO substrates the BmEH enantio- and regioselectivity is opposite to the inherent (R)-BmEH selectivity, the attack at the benzylic position (C1) of the (S)-enantiomer being the most favoured chemical outcome.

Indexed as

Bacillus megateriumBiocatalysisCatalytic DomainEpoxide HydrolasesEpoxy CompoundsHydrolysisModels, MolecularMolecular StructureSolubilityEpoxide HydrolasesEpoxy Compoundsstyrene oxide

Identifiers

PMID29026902
PMCPMC5708342
OpenAlexW2763138952

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.