Evidence map›Paper›PMID 29026650›Full record

ArticleVirus evolution2017

Accurate quantification of within- and between-host HBV evolutionary rates requires explicit transmission chain modelling.

Bram Vrancken, Marc A Suchard, Philippe Lemey

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Virus evolution, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Inconsistent temporal patterns of genetic variation of HCV among high-risk subjects may impact inference of transmission networks.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2019
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Bram VranckenDepartment of Microbiology and Immunology, Rega Institute for Medical Research, KU Leuven - University of Leuven, B-3000 Leuven, Belgium.ORCID 0000-0001-6547-5283
Marc A SuchardDepartment of Biomathematics, University of California, Los Angeles, CA 90095, USA.
Philippe LemeyDepartment of Microbiology and Immunology, Rega Institute for Medical Research, KU Leuven - University of Leuven, B-3000 Leuven, Belgium.ORCID 0000-0003-2826-5353

Funding

Tracking Evolution and Spread of Viral Genomes by Geospatial Observation ErrorR01AI117011 · NIAID · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI GONZALEZ HERNANDEZ, GRACIELA, SCOTCH, MATTHEW · 2016 to 2019
$1.9M
BAYESIAN MODELING AND DATA INTEGRATION IN INFECTIOUS DISEASE PHYLODYNAMICSR01AI107034 · NIAID · UNIVERSITY OF WASHINGTON · PI MININ, VOLODYMYR · 2013 to 2017
$1.7M
NIAID NIH HHS R01 AI107034NIAID NIH HHS R01 AI117011
6 · The paper itself

Abstract

Analyses of virus evolution in known transmission chains have the potential to elucidate the impact of transmission dynamics on the viral evolutionary rate and its difference within and between hosts. Lin et al. (2015,

Indexed as

BEASThepatitis B virusstatistical phylogeneticssubstitution ratetransmission chain

Identifiers

PMID29026650
PMCPMC5632516

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.