Evidence map›Paper›PMID 29026162›Full record

ArticleScientific reports2017

Improving membrane protein expression and function using genomic edits.

Heather M Jensen, Thomas Eng, Victor Chubukov, Robin A Herbert, Aindrila Mukhopadhyay

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 41 citations in OpenAlex.

  1. Pooled it
  2. Journal of pharmaceutical analysis · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Identification ofFrontiers in microbiology · 2024
    Article
  7. Article
  8. Review
  9. eGFP as an All-in-One Tag for Purification of Membrane Proteins.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  10. Pathogens (Basel, Switzerland) · 2022
    Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. ABiotechnology for biofuels · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Heather M JensenJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Thomas EngJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Victor ChubukovJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Robin A HerbertJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Aindrila MukhopadhyayJoint BioEnergy Institute, Emeryville, CA, 94608, USA. amukhopadhyay@lbl.gov.
Joint BioEnergy Institute · USLawrence Berkeley National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Expression of membrane proteins often leads to growth inhibition and perturbs central metabolism and this burden varies with the protein being overexpressed. There are also known strain backgrounds that allow greater expression of membrane proteins but that differ in efficacy across proteins. We hypothesized that for any membrane protein, it may be possible to identify a modified strain background where its expression can be accommodated with less burden. To directly test this hypothesis, we used a bar-coded transposon insertion library in tandem with cell sorting to assess genome-wide impact of gene deletions on membrane protein expression. The expression of five membrane proteins (CyoB, CydB, MdlB, YidC, and LepI) and one soluble protein (GST), each fused to GFP, was examined. We identified Escherichia coli mutants that demonstrated increased membrane protein expression relative to that in wild type. For two of the proteins (CyoB and CydB), we conducted functional assays to confirm that the increase in protein expression also led to phenotypic improvement in function. This study represents a systematic approach to broadly identify genetic loci that can be used to improve membrane protein expression, and our method can be used to improve expression of any protein that poses a cellular burden.

Indexed as

Gene EditingDNA Transposable ElementsEscherichia coliGene DeletionGene LibraryGreen Fluorescent ProteinsMembrane ProteinsMutagenesis, InsertionalReproducibility of ResultsDNA Transposable ElementsGreen Fluorescent ProteinsMembrane Proteins

Identifiers

PMID29026162
PMCPMC5638813
OpenAlexW2761401767

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.