Evidence map›Paper›PMID 29026152›Full record

ArticleScientific reports2017

Genetic and Epigenetic Profiling Reveals EZH2-mediated Down Regulation of OCT-4 Involves NR2F2 during Cardiac Differentiation of Human Embryonic Stem Cells.

Varsha Pursani, Prasad Pethe, Mohsin Bashir, Prabha Sampath, Vivek Tanavde, Deepa Bhartiya

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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  5. Deciphering the Cardiovascular Potential of Human CD34International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Varsha PursaniStem Cell Biology Department, ICMR- National Institute for Research in Reproductive Health, Mumbai, 400012, India.
Prasad PetheStem Cell Biology Department, ICMR- National Institute for Research in Reproductive Health, Mumbai, 400012, India.
Mohsin BashirInstitute of Medical Biology, Agency for Science Technology & Research (A*STAR), Singapore, 138648, Singapore.
Prabha SampathInstitute of Medical Biology, Agency for Science Technology & Research (A*STAR), Singapore, 138648, Singapore.
Vivek TanavdeBioinformatics Institute, Agency for Science Technology & Research (A*STAR), Singapore, 138671, Singapore.
Deepa BhartiyaStem Cell Biology Department, ICMR- National Institute for Research in Reproductive Health, Mumbai, 400012, India. bhartiyad@nirrh.res.in.
Institute of Medical Biology · SGNational Institute for Research in Reproductive Health · INAgency for Science, Technology and Research · SGNarsee Monjee Institute of Management Studies · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human embryonic (hES) stem cells are widely used as an in vitro model to understand global genetic and epigenetic changes that occur during early embryonic development. In-house derived hES cells (KIND1) were subjected to directed differentiation into cardiovascular progenitors (D12) and beating cardiomyocytes (D20). Transcriptome profiling of undifferentiated (D0) and differentiated (D12 and 20) cells was undertaken by microarray analysis. ChIP and sequential ChIP were employed to study role of transcription factor NR2F2 during hES cells differentiation. Microarray profiling showed that an alteration of about 1400 and 1900 transcripts occurred on D12 and D20 respectively compared to D0 whereas only 19 genes were altered between D12 and D20. This was found associated with corresponding expression pattern of chromatin remodelers, histone modifiers, miRNAs and lncRNAs marking the formation of progenitors and cardiomyocytes on D12 and D20 respectively. ChIP sequencing and sequential ChIP revealed the binding of NR2F2 with polycomb group member EZH2 and pluripotent factor OCT4 indicating its crucial involvement in cardiac differentiation. The study provides a detailed insight into genetic and epigenetic changes associated with hES cells differentiation into cardiac cells and a role for NR2F2 is deciphered for the first time to down-regulate OCT-4 via EZH2 during cardiac differentiation.

Indexed as

Cell DifferentiationCell LineCOUP Transcription Factor IIEnhancer of Zeste Homolog 2 ProteinEpigenesis, GeneticGene Expression Regulation, DevelopmentalHuman Embryonic Stem CellsHumansOctamer Transcription Factor-3Oligonucleotide Array Sequence AnalysisCOUP Transcription Factor IIEnhancer of Zeste Homolog 2 ProteinEZH2 protein, humanNR2F2 protein, humanOctamer Transcription Factor-3

Identifiers

PMID29026152
PMCPMC5638931
OpenAlexW2760853026

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.