Evidence map›Paper›PMID 29026093›Full record

ArticleScientific reports2017

Crystal structure of the flexible tandem repeat domain of bacterial cellulose synthesis subunit C.

Shingo Nojima, Ayumi Fujishima, Koji Kato, Kayoko Ohuchi, Nobutaka Shimizu, Kento Yonezawa, Kenji Tajima, Min Yao

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 38 citations in OpenAlex.

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  8. Comparative Genome Analysis of ThreeFrontiers in microbiology · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Shingo NojimaGraduate school of Life Science, Hokkaido University, Sapporo, Hokkaido, 060-0810, Japan.
Ayumi FujishimaGraduate school of Life Science, Hokkaido University, Sapporo, Hokkaido, 060-0810, Japan.
Koji KatoGraduate school of Life Science, Hokkaido University, Sapporo, Hokkaido, 060-0810, Japan.
Kayoko OhuchiGraduate school of Life Science, Hokkaido University, Sapporo, Hokkaido, 060-0810, Japan.
Nobutaka ShimizuPhoton Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki, 305-0801, Japan.
Kento YonezawaPhoton Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki, 305-0801, Japan.
Kenji TajimaFaculty of Engineering, Hokkaido University, Sapporo, Hokkaido, 060-8628, Japan.
Min YaoGraduate school of Life Science, Hokkaido University, Sapporo, Hokkaido, 060-0810, Japan. yao@castor.sci.hokudai.ac.jp.ORCID 0000-0003-1687-5904
Hokkaido University · JPHigh Energy Accelerator Research Organization · JPHokkaido University of Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial cellulose (BC) is synthesized and exported through the cell membrane via a large protein complex (terminal complex) that consists of three or four subunits. BcsC is a little-studied subunit considered to export BC to the extracellular matrix. It is predicted to have two domains: a tetratrico peptide repeat (TPR) domain and a β-barrelled outer membrane domain. Here we report the crystal structure of the N-terminal part of BcsC-TPR domain (Asp24-Arg272) derived from Enterobacter CJF-002. Unlike most TPR-containing proteins which have continuous TPR motifs, this structure has an extra α-helix between two clusters of TPR motifs. Five independent molecules in the crystal had three different conformations that varied at the hinge of the inserted α-helix. Such structural feature indicates that the inserted α-helix confers flexibility to the chain and changes the direction of the TPR super-helix, which was also suggested by structural analysis of BcsC-TPR (Asp24-Leu664) in solution by size exclusion chromatography-small-angle X-ray scattering. The flexibility at the α-helical hinge may play important role for exporting glucan chains.

Indexed as

Tandem Repeat SequencesAmino Acid MotifsCelluloseCrystallography, X-RayProtein DomainsProtein Structure, SecondaryProtein SubunitsScattering, Small AngleX-Ray DiffractionCelluloseProtein Subunits

Identifiers

PMID29026093
PMCPMC5638805
OpenAlexW2761797080

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.