Evidence map›Paper›PMID 29025893›Full record

ArticleGenome research2017

Disease-specific biases in alternative splicing and tissue-specific dysregulation revealed by multitissue profiling of lymphocyte gene expression in type 1 diabetes.

Jeremy R B Newman, Ana Conesa, Matthew Mika, Felicia N New, Suna Onengut-Gumuscu, Mark A Atkinson, Stephen S Rich, Lauren M McIntyre, Patrick Concannon

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genome research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 38 citations in OpenAlex.

  1. Trial
  2. Article
  3. Type 1 Diabetes Genetics Consortium.The Journal of clinical endocrinology and metabolism · 2025
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. UBASH3A Interacts with PTPN22 to RegulateInternational journal of molecular sciences · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Alternative splicing of lncRNAs in human diseases.American journal of cancer research · 2021
    Review
  17. Transcriptome Sequencing IdentifiesFrontiers in genetics · 2021
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Jeremy R B NewmanDepartment of Molecular Genetics and Microbiology, University of Florida, Gainesville, Florida 32610, USA.
Ana ConesaDepartment of Microbiology and Cell Science, Institute for Food and Agricultural Sciences, University of Florida, Gainesville, Florida 32610, USA.
Matthew MikaCenter for Public Health Genomics and Department of Public Health Sciences, University of Virginia, Charlottesville, Virginia 22908, USA.
Felicia N NewDepartment of Molecular Genetics and Microbiology, University of Florida, Gainesville, Florida 32610, USA.
Suna Onengut-GumuscuCenter for Public Health Genomics and Department of Public Health Sciences, University of Virginia, Charlottesville, Virginia 22908, USA.
Mark A AtkinsonDiabetes Institute, University of Florida, Gainesville, Florida 32610, USA.
Stephen S RichCenter for Public Health Genomics and Department of Public Health Sciences, University of Virginia, Charlottesville, Virginia 22908, USA.
Lauren M McIntyreDepartment of Molecular Genetics and Microbiology, University of Florida, Gainesville, Florida 32610, USA.
Patrick ConcannonGenetics Institute, University of Florida, Gainesville, Florida 32610, USA.
University of Florida · USVirginia Department of Health · US

Funding

Project 3P01AI042288 · NIAID · UNIVERSITY OF FLORIDA · PI Todd Michael Brusko · 1997 to 2026
$32.9M
Expression and proteomic characterization of risk loci in type 1 diabetesDP3DK085678 · NIDDK · UNIVERSITY OF VIRGINIA · PI RICH, STEPHEN S. · 2009 to 2009
$6.6M
Genetic variation of allele-specific transcriptome in DrosophilaR01GM077618 · NIGMS · UNIVERSITY OF FLORIDA · PI MCINTYRE, LAUREN M. · 2007 to 2010
$1.5M
Novel T1D risk variants from genomic analyses in high risk familiesR01DK106718 · NIDDK · UNIVERSITY OF FLORIDA · PI CONCANNON, PATRICK · 2015 to 2018
$1.4M
Quantitative Comparisons between genotypes and model speciesR01GM102227 · NIGMS · UNIVERSITY OF FLORIDA · PI MCINTYRE, LAUREN M. · 2012 to 2015
$1.2M
NIAID NIH HHS P01 AI042288NIDDK NIH HHS DP3 DK085678NIDDK NIH HHS R01 DK106718NIGMS NIH HHS R01 GM077618NIGMS NIH HHS R01 GM102227
6 · The paper itself

Abstract

Genome-wide association studies (GWAS) have identified multiple, shared allelic associations with many autoimmune diseases. However, the pathogenic contributions of variants residing in risk loci remain unresolved. The location of the majority of shared disease-associated variants in noncoding regions suggests they contribute to risk of autoimmunity through effects on gene expression in the immune system. In the current study, we test this hypothesis by applying RNA sequencing to CD4

Indexed as

Alternative SplicingAdultCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesDiabetes Mellitus, Type 1FemaleGene Expression ProfilingGene Regulatory NetworksGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansLymphocytesMaleProtein IsoformsQuantitative Trait LociReceptors, CCR1CCR1 protein, humanProtein IsoformsReceptors, CCR1

Identifiers

PMID29025893
PMCPMC5668939
OpenAlexW2763691170

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.