Evidence map›Paper›PMID 29023193›Full record

ArticleRNA biology2018

Distinct transcriptional and processing regulations control miR167a level in tomato during stress.

Jayanti Jodder, Rohit Das, Deepti Sarkar, Payel Bhattacharjee, Pallob Kundu

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 35 citations in OpenAlex.

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  7. The genome-wide characterization ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jayanti Joddera Division of Plant Biology , Bose Institute , Kolkata , West Bengal , India.
Rohit Dasa Division of Plant Biology , Bose Institute , Kolkata , West Bengal , India.
Deepti Sarkara Division of Plant Biology , Bose Institute , Kolkata , West Bengal , India.
Payel Bhattacharjeea Division of Plant Biology , Bose Institute , Kolkata , West Bengal , India.
Pallob Kundua Division of Plant Biology , Bose Institute , Kolkata , West Bengal , India.ORCID 0000-0003-4272-945X
Bose Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Besides their definite role in plant developmental processes miR167 also serve as mediator of stress response. Although differential expression of miR167 occurs during stresses, the regulatory-mechanism of biogenesis remained elusive. Therefore, using tomato as the model plant we have explored the mechanism of regulation of miR167a expression during stresses. Fungus or virus infections and exposure to cold stress raised the level of miR167a expression. Whereas, salt, drought and heat treatments resulted in the downregulation, indicating different stresses activated alternative mechanisms for miR167a regulation. Interestingly, the relative expression level of precursors in control versus temperature stressed plants differed from the pattern observed in the mature miR167a expression, suggesting that both transcriptional and processing regulation were important for biogenesis. The promoter-regulatory sequence of the major isoform MIR167a harbours several development and stress-related regulatory sites. Accordingly, promoter assays using transient transformation and transgenic tobacco plants proved stress-dependent regulation of the promoter. Further analyses corroborated the role of tomato DREB2A protein in the transcriptional regulation during temperature stress. Finally, in vitro assays established the importance of processing factors in cold-stress dependent efficient processing of MIR167a precursors. These data confirm distinct role of transcriptional and processing machinery in stress-influenced regulation of tomato miR167a biogenesis.

Indexed as

DroughtsAdaptation, PhysiologicalArabidopsisArabidopsis ProteinsCold TemperatureGene Expression Regulation, PlantMicroRNAsPlants, Genetically ModifiedPromoter Regions, GeneticSolanum lycopersicumStress, PhysiologicalTranscription FactorsArabidopsis ProteinsDREB2A protein, ArabidopsisMicroRNAsMIRN167 microRNA, ArabidopsisTranscription Factorsgene regulationmiR167plant stresspromotertomatotranscription and processing

Identifiers

PMID29023193
PMCPMC5785982
OpenAlexW2761458128

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.