Evidence map›Paper›PMID 29022880›Full record

ArticleeLife2017

Genetically tunable frustration controls allostery in an intrinsically disordered transcription factor.

Jing Li, Jordan T White, Harry Saavedra, James O Wrabl, Hesam N Motlagh, Kaixian Liu, James Sowers, Trina A Schroer, E Brad Thompson, Vincent J Hilser

Erratum issuedAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Deep mining of the protein energy landscape.Structural dynamics (Melville, N.Y.) · 2023
    Article
  11. The Roles of Androgens in Humans: Biology, Metabolic Regulation and Health.International journal of molecular sciences · 2022
    Review
  12. Article
  13. Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Structural insights into glucocorticoid receptor function.Biochemical Society transactions · 2021
    Review
  20. Glucocorticoid receptor condensates link DNA-dependent receptor dimerization and transcriptional transactivation.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Jing LiDepartment of Biology, Johns Hopkins University, Baltimore, United States.
Jordan T WhiteDepartment of Biology, Johns Hopkins University, Baltimore, United States.ORCID http://orcid.org/0000-0003-3202-4181
Harry SaavedraDepartment of Biology, Johns Hopkins University, Baltimore, United States.
James O WrablDepartment of Biology, Johns Hopkins University, Baltimore, United States.
Hesam N MotlaghDepartment of Biology, Johns Hopkins University, Baltimore, United States.
Kaixian LiuDepartment of Biology, Johns Hopkins University, Baltimore, United States.
James SowersDepartment of Biology, Johns Hopkins University, Baltimore, United States.
Trina A SchroerDepartment of Biology, Johns Hopkins University, Baltimore, United States.ORCID https://orcid.org/0000-0002-5065-1835
E Brad ThompsonDepartment of Biology, Johns Hopkins University, Baltimore, United States.ORCID http://orcid.org/0000-0003-1578-0241
Vincent J HilserDepartment of Biology, Johns Hopkins University, Baltimore, United States.ORCID http://orcid.org/0000-0002-7173-0073

Funding

CELLULAR AND MOLECULAR BIOLOGYT32GM007231 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI VAN DOREN, MARK B · 1985 to 2020
$18.4M
PROGRAM IN MOLECULAR BIOPHYSICST32GM008403 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BARRICK, DOUGLAS E. · 1990 to 2019
$13.5M
Thermodynamics of Protein FluctuationsR01GM063747 · NIGMS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI HILSER, VINCENT J. · 2001 to 2023
$7.9M
NIGMS NIH HHS R01 GM063747NIGMS NIH HHS T32 GM007231NIGMS NIH HHS T32 GM008403
6 · The paper itself

Abstract

Intrinsically disordered proteins (IDPs) present a functional paradox because they lack stable tertiary structure, but nonetheless play a central role in signaling, utilizing a process known as allostery. Historically, allostery in structured proteins has been interpreted in terms of propagated structural changes that are induced by effector binding. Thus, it is not clear how IDPs, lacking such well-defined structures, can allosterically affect function. Here, we show a mechanism by which an IDP can allosterically control function by simultaneously tuning transcriptional activation and repression, using a novel strategy that relies on the principle of 'energetic frustration'. We demonstrate that human glucocorticoid receptor tunes this signaling in vivo by producing translational isoforms differing only in the length of the disordered region, which modulates the degree of frustration. We expect this frustration-based model of allostery will prove to be generally important in explaining signaling in other IDPs.

Indexed as

Allosteric RegulationGene Expression RegulationHumansIntrinsically Disordered ProteinsProtein ConformationProtein IsoformsReceptors, GlucocorticoidRepressor ProteinsTranscription FactorsIntrinsically Disordered ProteinsProtein IsoformsReceptors, GlucocorticoidRepressor ProteinsTranscription Factorsallosterybiophysicsdisorderfrustrationstructural biology

Identifiers

PMID29022880
PMCPMC5697930

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.