Evidence map›Paper›PMID 29021251›Full record

ArticleThe Journal of biological chemistry2017

Direct evidence for conformational dynamics in major histocompatibility complex class I molecules.

Andy van Hateren, Malcolm Anderson, Alistair Bailey, Jörn M Werner, Paul Skipp, Tim Elliott

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. CryoEM structure of an MHC-I/TAPBPR peptide-bound intermediate reveals the mechanism of antigen proofreading.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Universal open MHC-I molecules for rapid peptide loading and enhanced complex stability across HLA allotypes.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Review
  18. Article
  19. Markov state modeling reveals alternative unbinding pathways for peptide-MHC complexes.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Atomistic structure and dynamics of the human MHC-I peptide-loading complex.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Andy van HaterenInstitute for Life Sciences and Centre for Cancer Immunology, Faculty of Medicine, Southampton SO17 1BJ.
Malcolm AndersonWaters Corporation, Stamford Avenue, Altrincham Road, Wilmslow SK9 4AX, United Kingdom.
Alistair BaileyInstitute for Life Sciences and Centre for Cancer Immunology, Faculty of Medicine, Southampton SO17 1BJ; Centre for Proteomic Research, Biological Sciences, and Institute for Life Sciences, Southampton SO17 1BJ.
Jörn M WernerInstitute for Life Sciences, Centre for Biological Sciences, and Faculty of Natural and Environmental Sciences, University of Southampton, Building 85, Southampton SO17 1BJ.
Paul SkippCentre for Proteomic Research, Biological Sciences, and Institute for Life Sciences, Southampton SO17 1BJ.
Tim ElliottInstitute for Life Sciences and Centre for Cancer Immunology, Faculty of Medicine, Southampton SO17 1BJ. Electronic address: tje@soton.ac.uk.
University of Southampton · GBWaters (United Kingdom) · GB

Funding

Biotechnology and Biological Sciences Research Council BB/L010402/1Biotechnology and Biological Sciences Research Council BB/M012387/1Cancer Research UK 16997Cancer Research UK C7056A
6 · The paper itself

Abstract

Major histocompatibility complex class I molecules (MHC I) help protect jawed vertebrates by binding and presenting immunogenic peptides to cytotoxic T lymphocytes. Peptides are selected from a large diversity present in the endoplasmic reticulum. However, only a limited number of peptides complement the polymorphic MHC specificity determining pockets in a way that leads to high-affinity peptide binding and efficient antigen presentation. MHC I molecules possess an intrinsic ability to discriminate between peptides, which varies in efficiency between allotypes, but the mechanism of selection is unknown. Elucidation of the selection mechanism is likely to benefit future immune-modulatory therapies. Evidence suggests peptide selection involves transient adoption of alternative, presumably higher energy conformations than native peptide-MHC complexes. However, the instability of peptide-receptive MHC molecules has hindered characterization of such conformational plasticity. To investigate the dynamic nature of MHC, we refolded MHC proteins with peptides that can be hydrolyzed by UV light and thus released. We compared the resultant peptide-receptive MHC molecules with non-hydrolyzed peptide-loaded MHC complexes by monitoring the exchange of hydrogen for deuterium in solution. We found differences in hydrogen-deuterium exchange between peptide-loaded and peptide-receptive molecules that were negated by the addition of peptide to peptide-receptive MHC molecules. Peptide hydrolysis caused significant increases in hydrogen-deuterium exchange in sub-regions of the peptide-binding domain and smaller increases elsewhere, including in the α3 domain and the non-covalently associated β

Indexed as

Antigen PresentationProtein FoldingAnimalsBinding SitesChickensDeuterium Exchange MeasurementHistocompatibility Antigens Class IPeptidesProtein BindingProtein ConformationUltraviolet RaysHistocompatibility Antigens Class IPeptidesallotypeantigen presentationhydrogen–deuterium exchangehydrogen–deuterium exchange mass spectrometrymajor histocompatibility complex (MHC)protein conformationprotein dynamicprotein foldingprotein structurestructure-function

Identifiers

PMID29021251
PMCPMC5724011
OpenAlexW2761298339

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.