Evidence map›Paper›PMID 29020998›Full record

Trial reportBreast cancer research : BCR2017

Proteomic profiling of breast cancer metabolism identifies SHMT2 and ASCT2 as prognostic factors.

Stephan Bernhardt, Michaela Bayerlová, Martina Vetter, Astrid Wachter, Devina Mitra, Volker Hanf, Tilmann Lantzsch, Christoph Uleer, Susanne Peschel, Jutta John and 8 more

Registry-linked trialOpen access · goldAbstract readClinical TrialMulticenter Study
In one paragraph

Trial report in Breast cancer research : BCR, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01592825 (PiA Trial), which is not on this map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01592825 unknown statusnot on this map

PiA Trial: a Cross-sectional, Multicenter, Consecutive Cohort Evaluating the Distribution of uPA/PAI-1 Versus St. Gallen Algorithm in >1000 Prospectively Included Patients

TypeobservationalSponsorMartin-Luther-Universität Halle-WittenbergRan2009 to 2021Enrolled1,000ConditionsBreast Cancer
3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 102 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Omics Technologies Improving Breast Cancer Research and Diagnostics.International journal of molecular sciences · 2023
    Review

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 1 country.

Stephan BernhardtDivision of Molecular Genome Analysis, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 580, 69120, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-8817-3672
Michaela BayerlováDepartment of Medical Statistics, University Medical Center Goettingen, Humboldtallee 32, 37073, Goettingen, Germany.
Martina VetterDepartment of Gynaecology, Martin-Luther-University, Halle-Wittenberg, Ernst-Grube-Str. 40, 06120, Halle (Saale), Germany.
Astrid WachterDepartment of Medical Statistics, University Medical Center Goettingen, Humboldtallee 32, 37073, Goettingen, Germany.
Devina MitraDivision of Molecular Genome Analysis, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 580, 69120, Heidelberg, Germany.
Volker HanfDepartment of Gynaecology, Hospital Fuerth, Jakob-Henle-Str. 1, 90768, Fuerth, Germany.
Tilmann LantzschDepartment of Gynaecology, Hospital St. Elisabeth and St. Barbara, Mauerstr. 5, 06110, Halle (Saale), Germany.
Christoph UleerOnkologische Praxis Uleer, Bahnhofstr. 5, 31134, Hildesheim, Germany.
Susanne PeschelDepartment of Gynaecology, St. Bernward Hospital, Treibestr. 9, 31134, Hildesheim, Germany.
Jutta JohnDepartment of Gynaecology, Helios Hospital Hildesheim, Weinberg 1, 31134, Hildesheim, Germany.
Jörg BuchmannInstitute of Pathology, Hospital Martha-Maria, Roentgenstraße 1, 06120, Halle (Saale), Germany.
Edith WeigertInstitute of Pathology, Hospital Fuerth, Jakob-Henle-Str. 1, 90768, Fuerth, Germany.
Karl-Friedrich BürrigInstitute of Pathology Hildesheim, Senator-Braun-Allee 35, 31135, Hildesheim, Germany.
Christoph ThomssenDepartment of Gynaecology, Martin-Luther-University, Halle-Wittenberg, Ernst-Grube-Str. 40, 06120, Halle (Saale), Germany.
Ulrike KorfDivision of Molecular Genome Analysis, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 580, 69120, Heidelberg, Germany.
Tim BeissbarthDepartment of Medical Statistics, University Medical Center Goettingen, Humboldtallee 32, 37073, Goettingen, Germany. Tim.Beissbarth@ams.med.uni-goettingen.de.
Stefan WiemannDivision of Molecular Genome Analysis, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 580, 69120, Heidelberg, Germany. s.wiemann@dkfz-heidelberg.de.
Eva Johanna KantelhardtDepartment of Gynaecology, Martin-Luther-University, Halle-Wittenberg, Ernst-Grube-Str. 40, 06120, Halle (Saale), Germany. eva.kantelhardt@uk-halle.de.
German Cancer Research Center · DEMartin Luther University Halle-Wittenberg · DEUniversity of Göttingen · DEKlinikum Fulda · DEUniversity of Hildesheim · DEKrankenhaus St. Elisabeth und St. Barbara · DEMartha-Maria Hospital · DESt. Bernward Krankenhaus · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBreast cancer tumors are known to be highly heterogeneous and differences in their metabolic phenotypes, especially at protein level, are less well-understood. Profiling of metabolism-related proteins harbors the potential to establish new patient stratification regimes and biomarkers promoting individualized therapy. In our study, we aimed to examine the relationship between metabolism-associated protein expression profiles and clinicopathological characteristics in a large cohort of breast cancer patients.

methodsBreast cancer specimens from 801 consecutive patients, diagnosed between 2009 and 2011, were investigated using reverse phase protein arrays (RPPA). Patients were treated in accordance with national guidelines in five certified German breast centers. To obtain quantitative expression data, 37 antibodies detecting proteins relevant to cancer metabolism, were applied. Hierarchical cluster analysis and individual target characterization were performed. Clustering results and individual protein expression patterns were associated with clinical data. The Kaplan-Meier method was used to estimate survival functions. Univariate and multivariate Cox regression models were applied to assess the impact of protein expression and other clinicopathological features on survival.

resultsWe identified three metabolic clusters of breast cancer, which do not reflect the receptor-defined subtypes, but are significantly correlated with overall survival (OS, p ≤ 0.03) and recurrence-free survival (RFS, p ≤ 0.01). Furthermore, univariate and multivariate analysis of individual protein expression profiles demonstrated the central role of serine hydroxymethyltransferase 2 (SHMT2) and amino acid transporter ASCT2 (SLC1A5) as independent prognostic factors in breast cancer patients. High SHMT2 protein expression was significantly correlated with poor OS (hazard ratio (HR) = 1.53, 95% confidence interval (CI) = 1.10-2.12, p ≤ 0.01) and RFS (HR = 1.54, 95% CI = 1.16-2.04, p ≤ 0.01). High protein expression of ASCT2 was significantly correlated with poor RFS (HR = 1.31, 95% CI = 1.01-1.71, p ≤ 0.05).

conclusionsOur data confirm the heterogeneity of breast tumors at a functional proteomic level and dissects the relationship between metabolism-related proteins, pathological features and patient survival. These observations highlight the importance of SHMT2 and ASCT2 as valuable individual prognostic markers and potential targets for personalized breast cancer therapy.

trial registrationClinicalTrials.gov, NCT01592825 . Registered on 3 May 2012.

Indexed as

AdultAgedAmino Acid Transport System ASCBiomarkers, TumorBreast NeoplasmsDisease-Free SurvivalFemaleGene Expression Regulation, NeoplasticGlycine HydroxymethyltransferaseHumansKaplan-Meier EstimateMiddle AgedMinor Histocompatibility AntigensPrognosisProteomicsAmino Acid Transport System ASCBiomarkers, TumorGlycine HydroxymethyltransferaseMinor Histocompatibility AntigensSHMT protein, humanSLC1A5 protein, humanBreast cancerCancer metabolismProtein arraysSHMT2SLC1A5

Identifiers

PMID29020998
PMCPMC5637318
OpenAlexW2763293165

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.