Evidence map›Paper›PMID 29020014›Full record

ArticlePLoS computational biology2017

The structured 'low temperature' phase of the retinal population code.

Mark L Ioffe, Michael J Berry

Abstract read
In one paragraph

Article in PLoS computational biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Optimal Encoding in Stochastic Latent-Variable Models.Entropy (Basel, Switzerland) · 2020
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Mark L IoffeDepartment of Physics, Princeton University, Princeton, New Jersey, United States of America.ORCID http://orcid.org/0000-0002-8229-3235
Michael J BerryPrinceton Neuroscience Institute, Princeton University, Princeton, New Jersey, United States of America.ORCID http://orcid.org/0000-0003-4133-7999

Funding

Neural Computation in the RetinaR01EY014196 · NEI · PRINCETON UNIVERSITY · PI BERRY, MICHAEL J · 2002 to 2011
$2.8M
Neural Computation in the RetinaR56EY014196 · NEI · PRINCETON UNIVERSITY · PI BERRY, MICHAEL J · 2007 to 2007
$389k
NEI NIH HHS R01 EY014196NEI NIH HHS R56 EY014196
6 · The paper itself

Abstract

Recent advances in experimental techniques have allowed the simultaneous recordings of populations of hundreds of neurons, fostering a debate about the nature of the collective structure of population neural activity. Much of this debate has focused on the empirical findings of a phase transition in the parameter space of maximum entropy models describing the measured neural probability distributions, interpreting this phase transition to indicate a critical tuning of the neural code. Here, we instead focus on the possibility that this is a first-order phase transition which provides evidence that the real neural population is in a 'structured', collective state. We show that this collective state is robust to changes in stimulus ensemble and adaptive state. We find that the pattern of pairwise correlations between neurons has a strength that is well within the strongly correlated regime and does not require fine tuning, suggesting that this state is generic for populations of 100+ neurons. We find a clear correspondence between the emergence of a phase transition, and the emergence of attractor-like structure in the inferred energy landscape. A collective state in the neural population, in which neural activity patterns naturally form clusters, provides a consistent interpretation for our results.

Indexed as

Models, NeurologicalAction PotentialsAmbystomaAnimalsCold TemperatureComputational BiologyEntropyPhotic StimulationRetinaRetinal Ganglion Cells

Identifiers

PMID29020014
PMCPMC5654267

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.