Evidence map›Paper›PMID 29018368›Full record

ArticleFrontiers in psychiatry2017

Biclustered Independent Component Analysis for Complex Biomarker and Subtype Identification from Structural Magnetic Resonance Images in Schizophrenia.

Cota Navin Gupta, Eduardo Castro, Srinivas Rachkonda, Theo G M van Erp, Steven Potkin, Judith M Ford, Daniel Mathalon, Hyo Jong Lee, Bryon A Mueller, Douglas N Greve and 8 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in psychiatry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 2 pooled it
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 2 syntheses or guidelines pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Article
  6. Biclustering data analysis: a comprehensive survey.Briefings in bioinformatics · 2024
    Review
  7. Article
  8. Article
  9. Dissociation between neuroanatomical and symptomatic subtypes in schizophrenia.European psychiatry : the journal of the Association of European Psychiatrists · 2023
    Article
  10. Dual ICA to extract interacting sets of genes and conditions from transcriptomic data.ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine · 2023
    Article
  11. Independent component analysis for internet gaming disorder.Dialogues in clinical neuroscience · 2023
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 11 institutions in 5 countries.

Cota Navin GuptaThe Mind Research Network, Albuquerque, NM, United States.
Eduardo CastroThe Mind Research Network, Albuquerque, NM, United States.
Srinivas RachkondaThe Mind Research Network, Albuquerque, NM, United States.
Theo G M van ErpDepartment of Psychiatry and Human Behavior, School of Medicine, University of California, Irvine, Irvine, CA, United States.
Steven PotkinDepartment of Psychiatry and Human Behavior, School of Medicine, University of California, Irvine, Irvine, CA, United States.
Judith M FordDepartment of Psychiatry, School of Medicine, University of California, San Francisco, San Francisco, CA, United States.
Daniel MathalonDepartment of Psychiatry, School of Medicine, University of California, San Francisco, San Francisco, CA, United States.
Hyo Jong LeeDivisions of Electronics and Information Engineering, Chonbuk National University, Jeonju, South Korea.
Bryon A MuellerDepartment of Psychiatry, University of Minnesota, Minneapolis, MN, United States.
Douglas N GreveMGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, MA, United States.
Ole A AndreassenNORMENT, KG Jebsen Center for Psychosis Research, Institute of Clinical Medicine, University of Oslo, Oslo, Norway.
Ingrid AgartzNORMENT, KG Jebsen Center for Psychosis Research, Institute of Clinical Medicine, University of Oslo, Oslo, Norway.
Andrew R MayerThe Mind Research Network, Albuquerque, NM, United States.
Julia StephenThe Mind Research Network, Albuquerque, NM, United States.
Rex E JungDepartment of Neurosurgery, University of New Mexico Health Sciences Center, Albuquerque, NM, United States.
Juan BustilloDepartment of Psychiatry, University of New Mexico, Albuquerque, NM, United States.
Vince D CalhounThe Mind Research Network, Albuquerque, NM, United States.
Jessica A TurnerThe Mind Research Network, Albuquerque, NM, United States.
Mind Research Network · USUniversity of New Mexico · USUniversity of California, Irvine · USUniversity of California, San Francisco · USAthinoula A. Martinos Center for Biomedical Imaging · USGeorgia State University · USIndian Institute of Technology Guwahati · INJeonbuk National University · KROslo University Hospital · NOUniversity of Minnesota · USUniversity of Oslo · NO

Funding

FUNCTION BIRNU24RR021992 · NCRR · UNIVERSITY OF CALIFORNIA-IRVINE · PI POTKIN, STEVEN G · 2006 to 2010
$25.0M
Transcranial Direct Current Stimulation for Treatment of Auditory Verbal HalluciP20GM103472 · NIGMS · THE MIND RESEARCH NETWORK · PI ABBOTT, CHRISTOPHER C · 2012 to 2017
$14.3M
Multivariate methods for identifying multitask/multimodal brain imaging biomarkersR01EB006841 · NIBIB · THE MIND RESEARCH NETWORK · PI VINCE D CALHOUN, Sergey Plis · 2007 to 2026
$9.8M
NEURAL MECHANISMS OF SCHIZOPHRENIAP20RR021938 · NCRR · THE MIND RESEARCH NETWORK · PI JUNG, REX · 2008 to 2011
$9.4M
Mining the Genomewide Scan: Genetic Profiles of Structural Loss in Schizophrenia: AD/ADRD supplementR01MH094524 · NIMH · THE MIND RESEARCH NETWORK · PI CALHOUN, VINCE D, TURNER, JESS · 2012 to 2021
$6.3M
Informed Data-Driven Fusion of Behavior, Brain Function, and GenesR01EB005846 · NIBIB · THE MIND RESEARCH NETWORK · PI CALHOUN, VINCE D · 2005 to 2016
$5.5M
Unified multivariate data-driven solutions for static and dynamic brain connectivityR01EB020407 · NIBIB · THE MIND RESEARCH NETWORK · PI ADALI, TULAY, CALHOUN, VINCE D · 2015 to 2018
$2.7M
Integration of brain imaging with genomic and epigenomic dataR01MH104680 · NIMH · TULANE UNIVERSITY OF LOUISIANA · PI CALHOUN, VINCE D, DENG, HONG-WEN · 2014 to 2017
$2.1M
Integration of fMRI imaging, genomics, network and biological knowledgeR01MH107354 · NIMH · TULANE UNIVERSITY OF LOUISIANA · PI WANG, YU-PING · 2015 to 2018
$1.9M
Integration of multiscale genomic data for comprehensive analysis of complex diseR01GM109068 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI WANG, YU-PING · 2014 to 2018
$1.6M
NCRR NIH HHS P20 RR021938NCRR NIH HHS U24 RR021992NIBIB NIH HHS R01 EB005846NIBIB NIH HHS R01 EB006841NIBIB NIH HHS R01 EB020407NIGMS NIH HHS P20 GM103472NIGMS NIH HHS R01 GM109068NIMH NIH HHS R01 MH094524NIMH NIH HHS R01 MH104680NIMH NIH HHS R01 MH107354
6 · The paper itself

Abstract

Clinical and cognitive symptoms domain-based subtyping in schizophrenia (Sz) has been critiqued due to the lack of neurobiological correlates and heterogeneity in symptom scores. We, therefore, present a novel data-driven framework using biclustered independent component analysis to detect subtypes from the reliable and stable gray matter concentration (GMC) of patients with Sz. The developed methodology consists of the following steps: source-based morphometry (SBM) decomposition, selection and sorting of two component loadings, subtype component reconstruction using group information-guided ICA (GIG-ICA). This framework was applied to the top two group discriminative components namely the insula/superior temporal gyrus/inferior frontal gyrus (I-STG-IFG component) and the superior frontal gyrus/middle frontal gyrus/medial frontal gyrus (SFG-MiFG-MFG component) from our previous SBM study, which showed diagnostic group difference and had the highest effect sizes. The aggregated multisite dataset consisted of 382 patients with Sz regressed of age, gender, and site voxelwise. We observed two subtypes (i.e., two different subsets of subjects) each heavily weighted on these two components, respectively. These subsets of subjects were characterized by significant differences in positive and negative syndrome scale (PANSS) positive clinical symptoms (

Indexed as

biclusteringgray matter concentrationgroup information-guided independent component analysisindependent component analysispositive and negative syndrome scale symptomssubtypes

Identifiers

PMID29018368
PMCPMC5623192
OpenAlexW2759614190

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.