Evidence map›Paper›PMID 29018194›Full record

ArticleNature communications2017

PNLDC1 is essential for piRNA 3' end trimming and transposon silencing during spermatogenesis in mice.

Deqiang Ding, Jiali Liu, Kunzhe Dong, Uros Midic, Rex A Hess, Huirong Xie, Elena Y Demireva, Chen Chen

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed, 1 pooled it
22.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 1 synthesis or guideline pooled it, 144 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. ER-Localized DeadenylaseExploration (Beijing, China) · 2026
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  5. The pachytene-specific lncRNANon-coding RNA research · 2026
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  6. Review
  7. Article
  8. Review
  9. Spatiotemporal control of PIWI compartmentalization by mitochondrial scaffolds defines pachytene piRNA pathway organization.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review

37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Deqiang DingDepartment of Animal Science, Michigan State University, East Lansing, MI, 48824, USA.ORCID http://orcid.org/0000-0002-7959-5654
Jiali LiuDepartment of Animal Science, Michigan State University, East Lansing, MI, 48824, USA.
Kunzhe DongUSDA, Agricultural Research Service, Avian Disease and Oncology Laboratory, East Lansing, MI, 48823, USA.
Uros MidicDepartment of Animal Science, Michigan State University, East Lansing, MI, 48824, USA.
Rex A HessDepartment of Comparative Biosciences, University of Illinois, Urbana, IL, 61801, USA.
Huirong XieTransgenic and Genome Editing Facility, Michigan State University, East Lansing, MI, 48824, USA.
Elena Y DemirevaTransgenic and Genome Editing Facility, Michigan State University, East Lansing, MI, 48824, USA.
Chen ChenDepartment of Animal Science, Michigan State University, East Lansing, MI, 48824, USA. chen2@msu.edu.ORCID http://orcid.org/0000-0001-9159-4489
Michigan State University · USAgricultural Research Service · USChina Agricultural University · CNUniversity of Illinois Urbana-Champaign · US

Funding

Primate Embryo Gene Expression ResourceR24OD012221 · OD · TEMPLE UNIV OF THE COMMONWEALTH · PI LATHAM, KEITH E · 2012 to 2016
$3.0M
Tudor Domain Proteins in Germline Genome DefenseR01HD084494 · NICHD · MICHIGAN STATE UNIVERSITY · PI CHEN, CHEN · 2015 to 2023
$3.0M
NICHD NIH HHS R01 HD084494NIH HHS R24 OD012221
6 · The paper itself

Abstract

Piwi-interacting RNAs are small regulatory RNAs with key roles in transposon silencing and regulation of gametogenesis. The production of mature piwi-interacting RNAs requires a critical step of trimming piwi-interacting RNA intermediates to achieve optimally sized piwi-interacting RNAs. The poly(A)-specific ribonuclease family deadenylase PNLDC1 is implicated in piwi-interacting RNA trimming in silkworms. The physiological function of PNLDC1 in mammals remains unknown. Using Pnldc1-deficient mice, here we show that PNLDC1 is required for piwi-interacting RNA biogenesis, transposon silencing, and spermatogenesis. Pnldc1 mutation in mice inhibits piwi-interacting RNA trimming and causes accumulation of untrimmed piwi-interacting RNA intermediates with 3' end extension, leading to severe reduction of mature piwi-interacting RNAs in the testis. Pnldc1 mutant mice exhibit disrupted LINE1 retrotransposon silencing and defect in spermiogenesis. Together, these results define PNLDC1 as a mammalian piwi-interacting RNA biogenesis factor that protects the germline genome and ensures normal sperm production in mice.piRNAs are regulatory RNAs that play a critical role in transposon silencing and gametogenesis. Here, the authors provide evidence that mammalian PNLDC1 is a regulator of piRNA biogenesis, transposon silencing and spermatogenesis, protecting the germline genome in mice.

Indexed as

AnimalsDNA Transposable ElementsExoribonucleasesGene SilencingGerm CellsMaleMiceMice, KnockoutRetroelementsRNA, Small InterferingSpermatogenesisTestisDNA Transposable ElementsExoribonucleasesRetroelementsRNA, Small Interfering

Identifiers

PMID29018194
PMCPMC5635004
OpenAlexW2764264432

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.