Evidence map›Paper›PMID 29016906›Full record

ArticlePlant & cell physiology2017

YUCCA9-Mediated Auxin Biosynthesis and Polar Auxin Transport Synergistically Regulate Regeneration of Root Systems Following Root Cutting.

Dongyang Xu, Jiahang Miao, Emi Yumoto, Takao Yokota, Masashi Asahina, Masaaki Watahiki

Open access · bronzeAbstract read
In one paragraph

Article in Plant & cell physiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
9.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Fourteen Stations of Auxin.Cold Spring Harbor perspectives in biology · 2022
    Review
  11. Article
  12. Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Pars Pro Toto: Every Single Cell Matters.Frontiers in plant science · 2021
    Review
  19. Article
  20. Rocks in the auxin stream: Wound-induced auxin accumulation andProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Dongyang XuGraduate School of Life Science, Hokkaido University, Sapporo, 060-0810 Japan.
Jiahang MiaoGraduate School of Life Science, Hokkaido University, Sapporo, 060-0810 Japan.
Emi YumotoDepartment of Biosciences, Teikyo University, Utsunomiya, 320-8551 Japan.
Takao YokotaDepartment of Biosciences, Teikyo University, Utsunomiya, 320-8551 Japan.
Masashi AsahinaDepartment of Biosciences, Teikyo University, Utsunomiya, 320-8551 Japan.
Masaaki WatahikiGraduate School of Life Science, Hokkaido University, Sapporo, 060-0810 Japan.
Hokkaido University · JPTeikyo University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recovery of the root system following physical damage is an essential issue for plant survival. An injured root system is able to regenerate by increases in lateral root (LR) number and acceleration of root growth. The horticultural technique of root pruning (root cutting) is an application of this response and is a common garden technique for controlling plant growth. Although root pruning is widely used, the molecular mechanisms underlying the subsequent changes in the root system are poorly understood. In this study, root pruning was employed as a model system to study the molecular mechanisms of root system regeneration. Notably, LR defects in wild-type plants treated with inhibitors of polar auxin transport (PAT) or in the auxin signaling mutant auxin/indole-3-acetic acid19/massugu2 were recovered by root pruning. Induction of IAA19 following root pruning indicates an enhancement of auxin signaling by root pruning. Endogenous levels of IAA increased after root pruning, and YUCCA9 was identified as the primary gene responsible. PAT-related genes were induced after root pruning, and the YUCCA inhibitor yucasin suppressed root regeneration in PAT-related mutants. Therefore, we demonstrate the crucial role of YUCCA9, along with other redundant YUCCA family genes, in the enhancement of auxin biosynthesis following root pruning. This further enhances auxin transport and activates downstream auxin signaling genes, and thus increases LR number.

Indexed as

RegenerationArabidopsisArabidopsis ProteinsBiological TransportGenes, PlantIndoleacetic AcidsMixed Function OxygenasesModels, BiologicalMultigene FamilyMutationPlant RootsSignal TransductionArabidopsis ProteinsIndoleacetic AcidsMixed Function OxygenasesYUCCA9 protein, ArabidopsisAuxin biosynthesisLateral rootPolar auxin transportRoot pruningYucasinYUCCA9

Identifiers

PMID29016906
PMCPMC5921505
OpenAlexW2752785786

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.