ArticleThe ISME journal2018
Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates.
Article in The ISME journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed, 42 citations in OpenAlex.
- Exploring the microorganisms biodiversity associated with sponge species in the red sea through 18S ribosomal RNA gene sequencing.AMB Express · 2025Article
- Multiple parallel origins of parasitic Marine Alveolates.Nature communications · 2023Article
- Beyond the limits of the unassigned protist microbiome: inferring large-scale spatio-temporal patterns of Syndiniales marine parasites.ISME communications · 2023Article
- Water masses shape pico-nano eukaryotic communities of the Weddell Sea.Communications biology · 2023Article
- Microscopic marine invertebrates are reservoirs for cryptic and diverse protists and fungi.Microbiome · 2022Article
- To Die or Not to Die-Regulated Cell Death and Survival in Cyanobacteria.Microorganisms · 2022Review
- Tiara: deep learning-based classification system for eukaryotic sequences.Bioinformatics (Oxford, England) · 2022Article
- Long rDNA amplicon sequencing of insect-infecting nephridiophagids reveals their affiliation to the Chytridiomycota and a potential to switch between hosts.Scientific reports · 2021Article
- Novel phylogenetic methods are needed for understanding gene function in the era of mega-scale genome sequencing.Nucleic acids research · 2020Article
- Unexpected mitochondrial genome diversity revealed by targeted single-cell genomics of heterotrophic flagellated protists.Nature microbiology · 2020Article
- A single-cell genome reveals diplonemid-like ancestry of kinetoplastid mitochondrial gene structure.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019Article
- Single cell ecogenomics reveals mating types of individual cells and ssDNA viral infections in the smallest photosynthetic eukaryotes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019Article
- Combining morphology, behaviour and genomics to understand the evolution and ecology of microbial eukaryotes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019Review
- Using single-cell transcriptomics to understand functional states and interactions in microbial eukaryotes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019Article
- Protist diversity and community assembly in surface sediments of the South China Sea.MicrobiologyOpen · 2019Article
- There Is Treasure Everywhere: Reductive Plastid Evolution in Apicomplexa in Light of Their Close Relatives.Biomolecules · 2019Review
- Leveraging single-cell genomics to expand the fungal tree of life.Nature microbiology · 2018Article
Corrections and comments
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Authors and funding
15 authors at 4 institutions in 6 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Marine alveolates (MALVs) are diverse and widespread early-branching dinoflagellates, but most knowledge of the group comes from a few cultured species that are generally not abundant in natural samples, or from diversity analyses of PCR-based environmental SSU rRNA gene sequences. To more broadly examine MALV genomes, we generated single cell genome sequences from seven individually isolated cells. Genes expected of heterotrophic eukaryotes were found, with interesting exceptions like presence of proteorhodopsin and vacuolar H
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