Evidence map›Paper›PMID 28994665›Full record

ArticlePhysics in medicine and biology2017

Combining deep learning with anatomical analysis for segmentation of the portal vein for liver SBRT planning.

Bulat Ibragimov, Diego Toesca, Daniel Chang, Albert Koong, Lei Xing

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Physics in medicine and biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04299919 (The Artificial Intelligent Prognostic Assessment and Pathological Basis Research of Early Primary Hepatocellular Carcinoma After Minimally Invasive Treatment Based on Multimodal MRI and Clinical Big Data), which is not on this map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04299919 unknown statusnot on this map

The Artificial Intelligent Prognostic Assessment and Pathological Basis Research of Early Primary Hepatocellular Carcinoma After Minimally Invasive Treatment Based on Multimodal MRI and Clinical Big Data

TypeobservationalSponsorThe First Affiliated Hospital of Dalian Medical UniversityRan2007 to 2024Enrolled1,200ConditionsHepatocellular CarcinomaArmsMinimally invasive treatment, Hepatectomy
3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 88 citations in OpenAlex.

  1. Article
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  6. Review
  7. Article
  8. Suitability of DNN-based vessel segmentation for SIRT planning.International journal of computer assisted radiology and surgery · 2024
    Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Hepatic Vein and Arterial Vessel Segmentation in Liver Tumor Patients.Computational intelligence and neuroscience · 2022
    Article
  17. Review
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Bulat IbragimovDepartment of Radiation Oncology, Stanford University School of Medicine, 875 Blake Wilbur Drive, Palo Alto, CA 94305, United States of America.
Diego ToescaDepartment of Radiation Oncology, Stanford University School of Medicine, 875 Blake Wilbur Drive, Palo Alto, CA 94305, United States of America.
Daniel ChangDepartment of Radiation Oncology, Stanford University School of Medicine, 875 Blake Wilbur Drive, Palo Alto, CA 94305, United States of America.
Albert KoongDepartment of Radiation Oncology, University of Texas MD Anderson Cancer Center, 1220 Holcombe Blvd, Houston, TX 77030, United States of America.
Lei XingDepartment of Radiation Oncology, Stanford University School of Medicine, 875 Blake Wilbur Drive, Palo Alto, CA 94305, United States of America.
Stanford University · USThe University of Texas MD Anderson Cancer Center · US

Funding

DASSIM-RT and Compressed Sensing-Based Inverse PlanningR01CA176553 · NCI · STANFORD UNIVERSITY · PI XING, LEI · 2014 to 2018
$2.4M
Computational Tools for Next Generation Volumetric Cone Beam Computed TomographyR01EB016777 · NIBIB · STANFORD UNIVERSITY · PI XING, LEI · 2013 to 2016
$2.1M
NCI NIH HHS R01 CA176553NIBIB NIH HHS R01 EB016777
6 · The paper itself

Abstract

Automated segmentation of the portal vein (PV) for liver radiotherapy planning is a challenging task due to potentially low vasculature contrast, complex PV anatomy and image artifacts originated from fiducial markers and vasculature stents. In this paper, we propose a novel framework for automated segmentation of the PV from computed tomography (CT) images. We apply convolutional neural networks (CNNs) to learn the consistent appearance patterns of the PV using a training set of CT images with reference annotations and then enhance the PV in previously unseen CT images. Markov random fields (MRFs) were further used to smooth the results of the enhancement of the CNN enhancement and remove isolated mis-segmented regions. Finally, CNN-MRF-based enhancement was augmented with PV centerline detection that relied on PV anatomical properties such as tubularity and branch composition. The framework was validated on a clinical database with 72 CT images of patients scheduled for liver stereotactic body radiation therapy. The obtained accuracy of the segmentation was [Formula: see text] 0.83 and [Formula: see text] 1.08 mm in terms of the median Dice coefficient and mean symmetric surface distance, respectively, when segmentation is encompassed into the PV region of interest. The obtained results indicate that CNNs and anatomical analysis can be used for the accurate segmentation of the PV and potentially integrated into liver radiation therapy planning.

Indexed as

RadiosurgeryRadiotherapy Planning, Computer-AssistedTomography, X-Ray ComputedHumansImage Processing, Computer-AssistedLiverMachine LearningPortal Vein

Identifiers

PMID28994665
PMCPMC5739057
OpenAlexW2763233973

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.