Evidence map›Paper›PMID 28993636›Full record

ArticleScientific reports2017

Involvement of PUF60 in Transcriptional and Post-transcriptional Regulation of Hepatitis B Virus Pregenomic RNA Expression.

Suofeng Sun, Kenji Nakashima, Masahiko Ito, Yuan Li, Takeshi Chida, Hirotaka Takahashi, Koichi Watashi, Tatsuya Sawasaki, Takaji Wakita, Tetsuro Suzuki

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. [Post-transcriptional regulation mechanism and antiviral strategy of hepatitis B virus RNA].Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology · 2024
    Review
  8. Article
  9. Article
  10. RNA binding proteins in cardiovascular development and disease.Current topics in developmental biology · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Suofeng SunDepartment of Virology and Parasitology, Hamamatsu University School of Medicine, Shizuoka, 431-3192, Japan.
Kenji NakashimaDepartment of Virology and Parasitology, Hamamatsu University School of Medicine, Shizuoka, 431-3192, Japan.
Masahiko ItoDepartment of Virology and Parasitology, Hamamatsu University School of Medicine, Shizuoka, 431-3192, Japan.
Yuan LiDepartment of Virology and Parasitology, Hamamatsu University School of Medicine, Shizuoka, 431-3192, Japan.
Takeshi ChidaDepartment of Virology and Parasitology, Hamamatsu University School of Medicine, Shizuoka, 431-3192, Japan.
Hirotaka TakahashiProteo-Science Center, Ehime University, Ehime, 790-8577, Japan.
Koichi WatashiDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan.
Tatsuya SawasakiProteo-Science Center, Ehime University, Ehime, 790-8577, Japan.
Takaji WakitaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan.
Tetsuro SuzukiDepartment of Virology and Parasitology, Hamamatsu University School of Medicine, Shizuoka, 431-3192, Japan. tesuzuki@hama-med.ac.jp.
Hamamatsu University School of Medicine · JPEhime University · JPNational Institute of Infectious Diseases · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here we identified PUF60, a splicing factor and a U2 small nuclear ribonucleoprotein auxiliary factor, as a versatile regulator of transcriptional and post-transcriptional steps in expression of hepatitis B virus (HBV) 3.5 kb, precore plus pregenomic RNA. We demonstrate that PUF60 is involved in: 1) up-regulation of core promoter activity through its interaction with transcription factor TCF7L2, 2) promotion of 3.5 kb RNA degradation and 3) suppression of 3.5 kb RNA splicing. When the 1.24-fold HBV genome was introduced into cells with the PUF60-expression plasmid, the 3.5 kb RNA level was higher at days 1-2 post-transfection but declined thereafter in PUF60-expressing cells compared to viral replication control cells. Deletion analyses showed that the second and first RNA recognition motifs (RRMs) within PUF60 are responsible for core promoter activation and RNA degradation, respectively. Expression of PUF60 mutant deleting the first RRM led to higher HBV production. To our knowledge, this is the first to identify a host factor involved in not only positively regulating viral gene expression but also negative regulation of the same viral life cycle. Functional linkage between transcriptional and post-transcriptional controls during viral replication might be involved in mechanisms for intracellular antiviral defense and viral persistence.

Indexed as

Gene Expression Regulation, ViralGenome, ViralTranscription, GeneticBase PairingCell Line, TumorGene DeletionHepatitis B virusHumansPromoter Regions, GeneticRepressor ProteinsRNA Splicing FactorsRNA StabilityRNA, ViralTranscription Factor 7-Like 2 ProteinUp-RegulationVirus Replicationpoly-U binding splicing factor 60KDaRepressor ProteinsRNA Splicing FactorsRNA, ViralTCF7L2 protein, humanTranscription Factor 7-Like 2 Protein

Identifiers

PMID28993636
PMCPMC5634508
OpenAlexW2763122910

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.