Evidence map›Paper›PMID 28993624›Full record

ArticleNature microbiology2017

Structure of the calcium-dependent type 2 secretion pseudopilus.

Aracelys López-Castilla, Jenny-Lee Thomassin, Benjamin Bardiaux, Weili Zheng, Mangayarkarasi Nivaskumar, Xiong Yu, Michael Nilges, Edward H Egelman, Nadia Izadi-Pruneyre, Olivera Francetic

Abstract read
In one paragraph

Article in Nature microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 77 citations in OpenAlex.

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  15. Characterization of a glycan-binding complex of minor pilins completes the analysis ofProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  19. A noncanonical cytochromeProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Aracelys López-CastillaNMR of Biomolecules Unit, Department of Structural Biology and Chemistry, Institut Pasteur, CNRS UMR3528, 28 rue du Dr Roux, 75724, Paris, France.
Jenny-Lee ThomassinBiochemistry of Macromolecular Interactions Unit, Department of Structural Biology and Chemistry, Institut Pasteur, CNRS ERL6002, 28 rue du Dr Roux, 75724, Paris, France.ORCID http://orcid.org/0000-0003-4226-420X
Benjamin BardiauxStructural Bioinformatics Unit, Department of Structural Biology and Chemistry, CNRS UMR3528, Institut Pasteur, 25 rue du Dr Roux, 75724, Paris, France.ORCID http://orcid.org/0000-0003-4014-9195
Weili ZhengDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908, USA.
Mangayarkarasi NivaskumarBiochemistry of Macromolecular Interactions Unit, Department of Structural Biology and Chemistry, Institut Pasteur, CNRS ERL6002, 28 rue du Dr Roux, 75724, Paris, France.
Xiong YuDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908, USA.
Michael NilgesStructural Bioinformatics Unit, Department of Structural Biology and Chemistry, CNRS UMR3528, Institut Pasteur, 25 rue du Dr Roux, 75724, Paris, France.
Edward H EgelmanDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908, USA.
Nadia Izadi-PruneyreNMR of Biomolecules Unit, Department of Structural Biology and Chemistry, Institut Pasteur, CNRS UMR3528, 28 rue du Dr Roux, 75724, Paris, France. nadia.izadi@pasteur.fr.ORCID http://orcid.org/0000-0002-6864-2961
Olivera FranceticBiochemistry of Macromolecular Interactions Unit, Department of Structural Biology and Chemistry, Institut Pasteur, CNRS ERL6002, 28 rue du Dr Roux, 75724, Paris, France. olivera.francetic@pasteur.fr.ORCID http://orcid.org/0000-0002-4145-5314
Centre National de la Recherche Scientifique · FRUniversity of Virginia · US

Funding

Cryo-EM of Helical Protein and Nucleoprotein Polymers at Near Atomic ResolutionR35GM122510 · NIGMS · UNIVERSITY OF VIRGINIA · PI EDWARD H. EGELMAN · 2017 to 2026
$7.3M
STRUCTURAL STUDIES OF RECA FILAMENTSR01GM035269 · NIGMS · YALE UNIVERSITY · PI EGELMAN, EDWARD H. · 1986 to 2016
$5.2M
European Research Council 294809NIGMS NIH HHS R01 GM035269NIGMS NIH HHS R35 GM122510
6 · The paper itself

Abstract

Many Gram-negative bacteria use type 2 secretion systems (T2SSs) to secrete proteins involved in virulence and adaptation. Transport of folded proteins via T2SS nanomachines requires the assembly of inner membrane-anchored fibres called pseudopili. Although efficient pseudopilus assembly is essential for protein secretion, structure-based functional analyses are required to unravel the mechanistic link between these processes. Here, we report an atomic model for a T2SS pseudopilus from Klebsiella oxytoca, obtained by fitting the NMR structure of its calcium-bound subunit PulG into the ~5-Å-resolution cryo-electron microscopy reconstruction of assembled fibres. This structure reveals the comprehensive network of inter-subunit contacts and unexpected features, including a disordered central region of the PulG helical stem, and highly flexible C-terminal residues on the fibre surface. NMR, mutagenesis and functional analyses highlight the key role of calcium in PulG folding and stability. Fibre disassembly in the absence of calcium provides a basis for pseudopilus length control, essential for protein secretion, and supports the Archimedes screw model for the type 2 secretion mechanism.

Indexed as

Bacterial ProteinsBinding SitesCalciumCircular DichroismCryoelectron MicroscopyEscherichia coliFimbriae, BacterialGram-Negative BacteriaIsotope LabelingKlebsiella oxytocaMagnetic Resonance SpectroscopyModels, MolecularProtein ConformationProtein FoldingProtein StabilityProtein TransportBacterial ProteinsCalciumType II Secretion Systems

Identifiers

PMID28993624
PMCPMC5705324
OpenAlexW2761286567

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.