Evidence map›Paper›PMID 28993619›Full record

ArticleNature communications2017

Enhanced nanochannel translocation and localization of genomic DNA molecules using three-dimensional nanofunnels.

Jinsheng Zhou, Yanqian Wang, Laurent D Menard, Sergey Panyukov, Michael Rubinstein, J Michael Ramsey

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Integrated In-Plane Nanofluidic Devices for Resistive-Pulse Sensing.Annual review of analytical chemistry (Palo Alto, Calif.) · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jinsheng ZhouDepartment of Chemistry, University of North Carolina, Chapel Hill, NC, 27599, USA.ORCID http://orcid.org/0000-0002-2694-7994
Yanqian WangDepartment of Physics and Astronomy, University of North Carolina, Chapel Hill, NC, 27599, USA.
Laurent D MenardDepartment of Chemistry, University of North Carolina, Chapel Hill, NC, 27599, USA.
Sergey PanyukovPN Lebedev Physical Institute, Russian Academy of Sciences, Moscow, 117924, Russia.ORCID http://orcid.org/0000-0003-0514-3310
Michael RubinsteinDepartment of Chemistry, University of North Carolina, Chapel Hill, NC, 27599, USA.
J Michael RamseyDepartment of Chemistry, University of North Carolina, Chapel Hill, NC, 27599, USA. jmramsey@unc.edu.

Funding

The Biophysics of Mucus Hydration and Adhesion/CohesionP01HL108808 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RUBINSTEIN, MICHAEL · 2012 to 2021
$23.9M
Nanotechnology for the Structural Interrogation of DNAR01HG002647 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RAMSEY, JOHN MICHAEL · 2004 to 2010
$6.3M
Synthesis of Effective and Safe Mucolytics for Pulmonary DiseaseUH3HL123645 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BOUCHER, RICHARD CHARLES · 2016 to 2018
$4.6M
Synthesis of Effective and Safe Mucolytics for Pulmonary DiseaseUH2HL123645 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BOUCHER, RICHARD CHARLES · 2014 to 2015
$2.9M
NHGRI NIH HHS R01 HG002647NHLBI NIH HHS P01 HL108808NHLBI NIH HHS UH2 HL123645NHLBI NIH HHS UH3 HL123645
6 · The paper itself

Abstract

The ability to precisely control the transport of single DNA molecules through a nanoscale channel is critical to DNA sequencing and mapping technologies that are currently under development. Here we show how the electrokinetically driven introduction of DNA molecules into a nanochannel is facilitated by incorporating a three-dimensional nanofunnel at the nanochannel entrance. Individual DNA molecules are imaged as they attempt to overcome the entropic barrier to nanochannel entry through nanofunnels with various shapes. Theoretical modeling of this behavior reveals the pushing and pulling forces that result in up to a 30-fold reduction in the threshold electric field needed to initiate nanochannel entry. In some cases, DNA molecules are stably trapped and axially positioned within a nanofunnel at sub-threshold electric field strengths, suggesting the utility of nanofunnels as force spectroscopy tools. These applications illustrate the benefit of finely tuning nanoscale conduit geometries, which can be designed using the theoretical model developed here.Forcing a DNA molecule into a nanoscale channel requires overcoming the free energy barrier associated with confinement. Here, the authors show that DNA injected through a funnel-shaped entrance more efficiently enters the nanochannel, thanks to facilitating forces generated by the nanofunnel geometry.

Indexed as

DNAEntropyImage Processing, Computer-AssistedModels, TheoreticalNanostructuresNanotechnologyTime FactorsDNA

Identifiers

PMID28993619
PMCPMC5634460

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.