Evidence map›Paper›PMID 28993426›Full record

ArticleEndocrine connections2017

Effect of diabetes status and hyperglycemia on global DNA methylation and hydroxymethylation.

Jairo Arturo Pinzón-Cortés, Angelina Perna-Chaux, Nicolás Steven Rojas-Villamizar, Angélica Díaz-Basabe, Diana Carolina Polanía-Villanueva, María Fernanda Jácome, Carlos Olimpo Mendivil, Helena Groot, Valeriano López-Segura

Open access · goldAbstract read
In one paragraph

Article in Endocrine connections, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 73 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Jairo Arturo Pinzón-CortésBiological Sciences DepartmentLaboratory of Human Genetics, Universidad de los Andes, Bogotá, Colombia.
Angelina Perna-ChauxBiological Sciences DepartmentLaboratory of Human Genetics, Universidad de los Andes, Bogotá, Colombia.
Nicolás Steven Rojas-VillamizarBiological Sciences DepartmentLaboratory of Human Genetics, Universidad de los Andes, Bogotá, Colombia.
Angélica Díaz-BasabeBiological Sciences DepartmentLaboratory of Human Genetics, Universidad de los Andes, Bogotá, Colombia.
Diana Carolina Polanía-VillanuevaBiological Sciences DepartmentLaboratory of Human Genetics, Universidad de los Andes, Bogotá, Colombia.
María Fernanda JácomeBiological Sciences DepartmentLaboratory of Human Genetics, Universidad de los Andes, Bogotá, Colombia.
Carlos Olimpo MendivilSchool of MedicineUniversidad de los Andes, Bogotá, Colombia.
Helena GrootBiological Sciences DepartmentLaboratory of Human Genetics, Universidad de los Andes, Bogotá, Colombia.
Valeriano López-SeguraBiological Sciences DepartmentLaboratory of Human Genetics, Universidad de los Andes, Bogotá, Colombia v.lopez22@uniandes.edu.co.
Universidad de Los Andes · CO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Type 2 diabetes mellitus (T2DM) is characterized by oxidative stress that could lead to chronic micro- and macrovascular complications. We hypothesized that some of the target organ damage is mediated by oxidative alterations in epigenetic mechanisms involving DNA methylation (5mC) and DNA hydroxymethylation (5hmC). We analyzed global DNA methylation and hydroxymethylation in peripheral blood cells in well-controlled and poorly controlled patients with T2DM and compared them with healthy controls. We also analyzed microarrays of DNA methylation and gene expression of other important tissues in the context of diabetes from the GEO database repository and then compared these results with our experimental gene expression data. DNA methylation and, more importantly, DNA hydroxymethylation levels were increased in poorly controlled patients compared to well-controlled and healthy individuals. Both 5mC and 5hmC measurements were correlated with the percentage of glycated hemoglobin, indicating a direct impact of hyperglycemia on changes over the epigenome. The analysis of methylation microarrays was concordant, and 5mC levels were increased in the peripheral blood of T2DM patients. However, the DNA methylation levels were the opposite of those in other tissues, such as the pancreas, adipose tissue and skeletal muscle. We hypothesize that a process of DNA oxidation associated with hyperglycemia may explain the DNA demethylation in which the activity of ten-eleven translocation (TET) proteins is not sufficient to complete the process. High levels of glucose lead to cellular oxidation, which triggers the process of DNA demethylation aided by TET enzymes, resulting in epigenetic dysregulation of the damaged tissues.

Indexed as

diabetesDNA hydroxymethylationDNA methylationoxidation

Identifiers

PMID28993426
PMCPMC5670276
OpenAlexW2764109911

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.