ArticleJournal of experimental botany2017
A genome-wide survey with different rapeseed ecotypes uncovers footprints of domestication and breeding.
Article in Journal of experimental botany, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 2 of them syntheses that pooled it.
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27 citing papers in PubMed, 2 syntheses or guidelines pooled it.
- Meta-analysis of seed weight QTLome using a consensus and highly dense genetic map in Brassica napus L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Pooled it
- Discovery of common loci and candidate genes for controlling salt-alkali tolerance and yield-related traits in Brassica napus L.Plant cell reports · 2023Pooled it
- SLAF-seq efficiently identifies SNP markers for wheat (Triticum aestivum L.) improvement.BMC genomics · 2026Article
- Integrating multiomic resources and gene expression studies to identify candidates for engineering climate-resilientFrontiers in plant science · 2026Review
- Exploring metabolite diversity in global rapeseed germplasm: insights into ecotypes, geographical influences, and correlations with diabetes.BMC plant biology · 2025Article
- Sensitivity to Photoperiod Is a Complex Trait inPlant direct · 2025Article
- Elucidation of the genetic basis of variation in flowering time in Brassica napus via genome-wide association studies and gene coexpression analysis.BMC plant biology · 2025Article
- Selective modes affect gene feature and function differentiation of tetraploidFrontiers in plant science · 2023Article
- Genetic networks underlying salinity tolerance in wheat uncovered with genome-wide analyses and selective sweeps.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Genomic insights into positive selection during barley domestication.BMC plant biology · 2022Article
- Genomic selection and genetic architecture of agronomic traits during modern rapeseed breeding.Nature genetics · 2022Article
- Article
- Machine learning assisted dynamic phenotypes and genomic variants help understand the ecotype divergence in rapeseed.Frontiers in plant science · 2022Article
- SNP- and Haplotype-Based GWAS of Flowering-Related Traits inPlants (Basel, Switzerland) · 2021Article
- Meta-analysis: Congruence of genomic and phenotypic differentiation across diverse natural study systems.Evolutionary applications · 2021Article
- A high-quality Brassica napus genome reveals expansion of transposable elements, subgenome evolution and disease resistance.Plant biotechnology journal · 2021Article
- Understanding Host-Pathogen Interactions inPlants (Basel, Switzerland) · 2020Review
- Review
- Article
- Identification of regions under selection and loci controlling agronomic traits in a soft red winter wheat population.The plant genome · 2020Article
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11 authors.
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Abstract
Rapeseed (Brassica napus L.) is an important oilseed crop. Despite a short period of domestication and breeding, rapeseed has formed three diverse ecotype groups, namely spring, winter, and semi-winter. However, the genetic changes among the three ecotype groups have remained largely unknown. To detect selective signals, a set of 327 accessions from a worldwide collection were genotyped using a Brassica array, producing 33 186 high-quality single nucleotide polymorphisms (SNPs). Linkage disequilibrium (LD) was unevenly distributed across the genome. A total of 705 (78.2%) weak LD regions were found in the A subgenome, whereas 445 (72.6%) strong LD regions were in the C subgenome. By calculating the nucleotide diversity and population differentiation indices, a total of 198 selective sweeps were identified across ecotype groups, spanning 5.91% (37.9 Mb) of the genome. Within these genome regions, a few known functional genes or loci were found to be in association with environmental adaptability and yield-related traits. In particular, all 12 SNPs detected in significant association with flowering time among accessions were in the selection regions between ecotype groups. These findings provide new insights into the structure of the B. napus genome and uncover the footprints of domestication and breeding.
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