Evidence map›Paper›PMID 28991178›Full record

ArticleViruses2017

Polyprotein Processing as a Determinant for in Vitro Activity of Semliki Forest Virus Replicase.

Maija K Pietilä, Irina C Albulescu, Martijn J van Hemert, Tero Ahola

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Maija K PietiläDepartment of Food and Environmental Sciences, University of Helsinki, Viikinkaari 9 PO Box 56, 00014 Helsinki, Finland. maija.pietila@helsinki.fi.
Irina C AlbulescuDepartment of Medical Microbiology, Leiden University Medical Center PO Box 9600, 2300 RC, Leiden, The Netherlands. i.c.albulescu@lumc.nl.
Martijn J van HemertDepartment of Medical Microbiology, Leiden University Medical Center PO Box 9600, 2300 RC, Leiden, The Netherlands. m.j.van_hemert@lumc.nl.
Tero AholaDepartment of Food and Environmental Sciences, University of Helsinki, Viikinkaari 9 PO Box 56, 00014 Helsinki, Finland. tero.ahola@helsinki.fi.
Leiden University Medical Center · NLUniversity of Helsinki · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Semliki Forest virus (SFV) is an arthropod-borne alphavirus that induces membrane invaginations (spherules) in host cells. These harbor the viral replication complexes (RC) that synthesize viral RNA. Alphaviruses have four replicase or nonstructural proteins (nsPs), nsP1-4, expressed as polyprotein P1234. An early RC, which synthesizes minus-strand RNA, is formed by the polyprotein P123 and the polymerase nsP4. Further proteolytic cleavage results in a late RC consisting of nsP1-4 and synthesizing plus strands. Here, we show that only the late RCs are highly active in RNA synthesis in vitro. Furthermore, we demonstrate that active RCs can be isolated from both virus-infected cells and cells transfected with the wild-type replicase in combination with a plasmid expressing a template RNA. When an uncleavable polyprotein P123 and polymerase nsP4 were expressed together with a template, high levels of minus-strand RNA were produced in cells, but RCs isolated from these cells were hardly active in vitro. Furthermore, we observed that the uncleavable polyprotein P123 and polymerase nsP4, which have previously been shown to form spherules even in the absence of the template, did not replicate an exogenous template. Consequently, we hypothesize that the replicase proteins were sequestered in spherules and were no longer able to recruit a template.

Indexed as

AnimalsArthropodsGene Expression Regulation, ViralPolyproteinsProtein Processing, Post-TranslationalRNA-Dependent RNA PolymeraseRNA, ViralSemliki forest virusViral Nonstructural ProteinsVirus ReplicationPolyproteinsRNA-Dependent RNA PolymeraseRNA, ViralViral Nonstructural Proteinsalphavirusin vitro replicationnonstructural proteinpolymerasereplication complexRNA synthesisSemliki Forest virus

Identifiers

PMID28991178
PMCPMC5691643
OpenAlexW2760850092

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.