Evidence map›Paper›PMID 28990753›Full record

ArticleACS chemical biology2017

Novel Electrophilic Scaffold for Imaging of Essential Penicillin-Binding Proteins in Streptococcus pneumoniae.

Shabnam Sharifzadeh, Michael J Boersma, Ozden Kocaoglu, Alireza Shokri, Clayton L Brown, Joshua D Shirley, Malcolm E Winkler, Erin E Carlson

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Review
  3. Penicillin-binding protein redundancy inApplied and environmental microbiology · 2024
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Laponite-Based Nanomaterials for Drug Delivery.Advanced healthcare materials · 2022
    Review
  9. Expanded profiling ofBiological chemistry · 2022
    Article
  10. Article
  11. Article
  12. The Pneumococcal Divisome: Dynamic Control ofFrontiers in microbiology · 2021
    Review
  13. Review
  14. Review
  15. Review
  16. Article
  17. Review
  18. Chemical Reporters for Exploring Microbiology and Microbiota Mechanisms.Chembiochem : a European journal of chemical biology · 2020
    Review
  19. Article
  20. Chemical tools to characterize peptidoglycan synthases.Current opinion in chemical biology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Shabnam SharifzadehDepartments of Chemistry, ‡Medicinal Chemistry, and Biochemistry, §Molecular Biology and Biophysics, University of Minnesota , Minneapolis, Minnesota 55455, United States.
Michael J BoersmaDepartments of Chemistry, ‡Medicinal Chemistry, and Biochemistry, §Molecular Biology and Biophysics, University of Minnesota , Minneapolis, Minnesota 55455, United States.
Ozden KocaogluDepartments of Chemistry, ‡Medicinal Chemistry, and Biochemistry, §Molecular Biology and Biophysics, University of Minnesota , Minneapolis, Minnesota 55455, United States.
Alireza ShokriDepartments of Chemistry, ‡Medicinal Chemistry, and Biochemistry, §Molecular Biology and Biophysics, University of Minnesota , Minneapolis, Minnesota 55455, United States.
Clayton L BrownDepartments of Chemistry, ‡Medicinal Chemistry, and Biochemistry, §Molecular Biology and Biophysics, University of Minnesota , Minneapolis, Minnesota 55455, United States.
Joshua D ShirleyDepartments of Chemistry, ‡Medicinal Chemistry, and Biochemistry, §Molecular Biology and Biophysics, University of Minnesota , Minneapolis, Minnesota 55455, United States.
Malcolm E WinklerDepartments of Chemistry, ‡Medicinal Chemistry, and Biochemistry, §Molecular Biology and Biophysics, University of Minnesota , Minneapolis, Minnesota 55455, United States.
Erin E CarlsonDepartments of Chemistry, ‡Medicinal Chemistry, and Biochemistry, §Molecular Biology and Biophysics, University of Minnesota , Minneapolis, Minnesota 55455, United States.ORCID 0000-0001-8287-8893
University of Minnesota · US

Funding

Dynamics of bacterial peptidoglycan synthesisR01GM113172 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BRUN, YVES V, VANNIEUWENHZE, MICHAEL S · 2015 to 2018
$3.5M
Targeted natural product diversification to identify novel antibacterial agentsDP2OD008592 · OD · UNIVERSITY OF MINNESOTA · PI CARLSON, ERIN ELIZABETH · 2011 to 2011
$2.2M
Mechanisms of Chemokine Killing and Resistance of Streptococcus pneumoniaeR01GM114315 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI WINKLER, MALCOLM E. · 2015 to 2018
$1.1M
NIGMS NIH HHS R01 GM113172NIGMS NIH HHS R01 GM114315NIH HHS DP2 OD008592
6 · The paper itself

Abstract

Peptidoglycan (PG) is a mesh-like heteropolymer made up of glycan chains cross-linked by short peptides and is the major scaffold of eubacterial cell walls, determining cell shape, size, and chaining. This structure, which is required for growth and survival, is located outside of the cytoplasmic membrane of bacterial cells, making it highly accessible to antibiotics. Penicillin-binding proteins (PBPs) are essential for construction of PG and perform transglycosylase activities to generate the glycan strands and transpeptidation to cross-link the appended peptides. The β-lactam antibiotics, which are among the most clinically effective antibiotics for the treatment of bacterial infections, inhibit PBP transpeptidation, ultimately leading to cell lysis. Despite this importance, the discrete functions of individual PBP homologues have been difficult to determine. These major gaps in understanding of PBP activation and macromolecular interactions largely result from a lack of tools to assess the functional state of specific PBPs in bacterial cells. We have identified β-lactones as a privileged scaffold for the generation of PBP-selective probes and utilized these compounds for imaging of the essential proteins, PBP2x and PBP2b, in Streptococcus pneumoniae. We demonstrated that while PBP2b activity is restricted to a ring surrounding the division sites, PBP2x activity is present both at the septal center and at the surrounding ring. These spatially separate regions of PBP2x activity could not be detected by previous activity-based approaches, which highlights a critical strength of our PBP-selective imaging strategy.

Indexed as

Bacterial ProteinsFluorescent DyesLactonesOptical ImagingPenicillin-Binding ProteinsSmall Molecule LibrariesStreptococcus pneumoniaeBacterial ProteinsFluorescent DyesLactonesPenicillin-Binding ProteinsSmall Molecule Libraries

Identifiers

PMID28990753
PMCPMC5742093
OpenAlexW2761661483

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.