Evidence map›Paper›PMID 28989033›Full record

ArticleJournal of chromatography. A2017

Capillary electrophoresis-mass spectrometry for direct structural identification of serum N-glycans.

Christa M Snyder, Xiaomei Zhou, Jonathan A Karty, Bryan R Fonslow, Milos V Novotny, Stephen C Jacobson

Open access · bronzeAbstract read
In one paragraph

Article in Journal of chromatography. A, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 56 citations in OpenAlex.

  1. Review
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  11. State-of-the-Art Glycomics Technologies in Glycobiotechnology.Advances in biochemical engineering/biotechnology · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Christa M SnyderDepartment of Chemistry, Indiana University, Bloomington, IN 47405-7102, United States.
Xiaomei ZhouDepartment of Chemistry, Indiana University, Bloomington, IN 47405-7102, United States.
Jonathan A KartyDepartment of Chemistry, Indiana University, Bloomington, IN 47405-7102, United States.
Bryan R FonslowSCIEX Separations, Brea, CA 92821, United States.
Milos V NovotnyDepartment of Chemistry, Indiana University, Bloomington, IN 47405-7102, United States.
Stephen C JacobsonDepartment of Chemistry, Indiana University, Bloomington, IN 47405-7102, United States. Electronic address: jacobson@indiana.edu.
Indiana University Bloomington · USSeparation Systems (United States) · US

Funding

Microfluidic Devices for Cancer Screening by N-Glycan AnalysisR01GM106084 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI JACOBSON, STEPHEN C · 2014 to 2017
$1.2M
NIGMS NIH HHS R01 GM106084
6 · The paper itself

Abstract

Through direct coupling of capillary electrophoresis (CE) to mass spectrometry (MS) with a sheathless interface, we have identified 77 potential N-glycan structures derived from human serum. We confirmed the presence of N-glycans previously identified by indirect methods, e.g., electrophoretic mobility standards, obtained 31 new N-glycan structures not identified in our prior work, differentiated co-migrating structures, and determined specific linkages on isomers featuring sialic acids. Serum N-glycans were cleaved from proteins, neutralized via methylamidation, and labeled with the fluorescent tag 8-aminopyrene-1,3,6-trisulfonic acid, which renders the glycan fluorescent and provides a -3 charge for electrophoresis and negative-mode MS detection. The neutralization reaction also stabilizes the labile sialic acids. In addition to methylamidation, native charges from sialic acids were neutralized through reaction with 4-(4,6-dimethoxy-1,3,5-triazin-2-yl)-4-methylmorpholinium to amidate α2,6-linked sialic acids in the presence of ammonium chloride and form lactones with α2,3-linked sialic acids. This neutralization effectively labels each type of sialic acid with a unique mass to determine specific linkages on sialylated N-glycans. For both neutralization schemes, we compared the results from microchip electrophoresis and CE.

Indexed as

Electrophoresis, CapillaryMass SpectrometryBlood Chemical AnalysisHumansIsomerismN-Acetylneuraminic AcidPolysaccharidesPyrenes8-aminopyrene-1,3,6-trisulfonic acidN-Acetylneuraminic AcidPolysaccharidesPyrenesCapillary electrophoresisGlycomicsMass spectrometryMicrochip electrophoresisN-glycanSialic acid

Identifiers

PMID28989033
PMCPMC5691604
OpenAlexW2750924492

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.