Evidence map›Paper›PMID 28988383›Full record

ArticleParasitology research2017

Diversity of free-living amoebae in soils and their associated human opportunistic bacteria.

Elodie Denet, Bénédicte Coupat-Goutaland, Sylvie Nazaret, Michel Pélandakis, Sabine Favre-Bonté

Abstract read
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In one paragraph

Article in Parasitology research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

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  18. Intracellular Microbiome Profiling of thePathogens (Basel, Switzerland) · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Elodie DenetUniversité Lyon 1 , CNRS UMR 5557/ UMR INRA 1418 Ecologie Microbienne, F-69622, Villeurbanne CEDEX, France. elodie.denet@live.fr.ORCID http://orcid.org/0000-0003-2683-8293
Bénédicte Coupat-GoutalandUniversité Lyon 1 , CNRS UMR 5240 Microbiologie, Adaptation, Pathogénie, F-69622, Villeurbanne CEDEX, France.
Sylvie NazaretUniversité Lyon 1 , CNRS UMR 5557/ UMR INRA 1418 Ecologie Microbienne, F-69622, Villeurbanne CEDEX, France.
Michel PélandakisUniversité Lyon 1 , CNRS UMR 5240 Microbiologie, Adaptation, Pathogénie, F-69622, Villeurbanne CEDEX, France.
Sabine Favre-BontéUniversité Lyon 1 , CNRS UMR 5557/ UMR INRA 1418 Ecologie Microbienne, F-69622, Villeurbanne CEDEX, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Free-living amoebae (FLA) are ubiquitous protozoa found worldwide in the environment. They feed by phagocytosis on various microorganisms. However, some bacteria, i.e., amoebae-resistant bacteria (ARB) or bacterial endocytobionts, can resist phagocytosis and even multiply inside FLA. This study investigated the diversity of culturable FLA in various soils from agricultural and mining sites and their bacterial endocytobionts. FLA were cultured on non-nutrient agar with alive Escherichia coli and identified by PCR and sequencing. Amoebae were lysed and bacterial endocytobionts were cultured on TSA 1/10 and Drigalski medium. Bacterial isolates were identified by PCR and 16S rDNA sequencing and characterized for their antibiotic resistance properties. To measure bacterial virulence, the amoebal model Dictyostelium discoideum was used. The analysis of FLA diversity showed that Tetramitus was the most prevalent genus in agricultural soil from Burkina Faso (73%) and garden soil from Vietnam (42%) while Naegleria and Acanthamoeba were dominant genera in mining soil from Vietnam (55%) and French alpine soil (77%). Some genera were only present in one out of the four soils analyzed. The bacterial endocytobiont included Firmicutes, Bacteroidetes, Proteobacteria, and Actinobacteria. Human opportunistic pathogens identified as Pseudomonas aeruginosa, Stenotrophomonas maltophilia, and Burkholderia cepacia were found associated with amoebae including Micriamoeba, Tetramitus, Willaertia, or Acanthamoeba. Some of these bacteria showed various antibiotic resistance phenotypes and were virulent. Our study confirms that the occurrence of these opportunistic bacteria with FLA in soils may be important for the survival, multiplication, and spread of pathogens in the environment.

Indexed as

AcanthamoebaAgricultureAmoebaBurkina FasoDictyosteliumEscherichia coliHumansNaegleriaPolymerase Chain ReactionRNA, Ribosomal, 16SSoilSoil MicrobiologySymbiosisVietnamRNA, Ribosomal, 16SSoilAntibiotic resistanceBacterial endocytobiontFree-living amoebaeHuman pathogenSoilVirulence

Identifiers

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Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.