Evidence map›Paper›PMID 28986834›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2018

Assays to Demonstrate the Roles of Arenaviral Nucleoproteins (NPs) in Viral RNA Synthesis and in Suppressing Type I Interferon.

Qinfeng Huang, Junjie Shao, Yuying Liang, Hinh Ly

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.4field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Lassa Virus Genetics.Current topics in microbiology and immunology · 2023
    Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Qinfeng HuangDepartment of Swine Infectious Diseases, Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China.
Junjie ShaoDepartment of Veterinary and Biomedical Sciences, University of Minnesota, Twin Cities, MN, USA.
Yuying LiangDepartment of Veterinary and Biomedical Sciences, University of Minnesota, Twin Cities, 1988 Fitch Ave., 295 AS/VM Bldg., Saint Paul, MN, 55108, USA. liangy@umn.edu.
Hinh LyDepartment of Veterinary and Biomedical Sciences, University of Minnesota, Twin Cities, 1988 Fitch Ave., 295 AS/VM Bldg., Saint Paul, MN, 55108, USA. hly@umn.edu.
University of Minnesota · USShanghai Veterinary Research Institute · CNTwin Cities Orthopedics · US

Funding

Yessinia autotransporters (Yaps): Structure, function, and host responseU54AI057157 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GOLDMAN, WILLIAM E · 2003 to 2013
$91.4M
Mechanism of Lassa fever virus Z protein in immune suppression and viral virulenceR01AI131586 · NIAID · UNIVERSITY OF MINNESOTA · PI LIANG, YUYING, LY, HINH · 2017 to 2021
$3.8M
Molecular determinants of virulent arenavirus infection in hostsR01AI083409 · NIAID · UNIVERSITY OF MINNESOTA · PI LIANG, YUYING · 2010 to 2014
$2.1M
Novel Mechanism of Immune Evasion by Arenaviral NucleoproteinsR01AI093580 · NIAID · UNIVERSITY OF MINNESOTA · PI LY, HINH · 2012 to 2016
$1.9M
Cap snatching mechanism of arenavirusesR56AI091805 · NIAID · UNIVERSITY OF MINNESOTA · PI LY, HINH · 2011 to 2011
$304k
NIAID NIH HHS R01 AI083409NIAID NIH HHS R01 AI093580NIAID NIH HHS R01 AI131586NIAID NIH HHS R56 AI091805NIAID NIH HHS U54 AI057157
6 · The paper itself

Abstract

Arenaviruses, such as Lassa virus (LASV) and Pichindé virus (PICV), are enveloped viruses with a bi-segmented ambisense RNA genome. The large (L) genomic segment encodes the Z matrix protein and the L RNA-dependent RNA polymerase, whereas the small (S) genomic segment encodes the nucleoprotein (NP) and the glycoprotein (GPC). The NP encapsidates viral genome, is required for viral transcription and replication, and acts as a type I interferon (IFN) antagonist. This article describes assays to demonstrate that NP contains 3'-5' exoribonuclease (RNase) activity to degrade modeled RNA of the pathogen-associated molecular pattern type and suppresses the IFNβ promoter-driven luciferase reporter gene. The minigenomic (MG) assay is used to assess the role of NP in replicating and transcribing a viral promoter-driven luciferase reporter gene. These powerful assays demonstrate the versatility of NP in mediating viral replication as well as in modulating host innate immune responses.

Indexed as

AnimalsArenavirusGenome, ViralGlycoproteinsHumansImmunity, InnateInterferon Type INucleoproteinsRNA, ViralViral ProteinsGlycoproteinsInterferon Type INucleoproteinsRNA, ViralViral ProteinsArenavirusLassa virusNucleoprotein

Identifiers

PMID28986834
PMCPMC6391876
OpenAlexW2761909855

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.