Evidence map›Paper›PMID 28986262›Full record

ArticleBiochemical and biophysical research communications2017

A simple elution strategy for biotinylated proteins bound to streptavidin conjugated beads using excess biotin and heat.

Joleen S Cheah, Soichiro Yamada

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
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  3. Review
  4. Article
  5. Article
  6. Article
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  8. Article
  9. Article
  10. Tissue-Specific Biotinylation for Interorgan Communication.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. PeerJ · 2024
    Article
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  19. PeerJ · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Joleen S CheahBiomedical Engineering Department, University of California, Davis, United States.
Soichiro YamadaBiomedical Engineering Department, University of California, Davis, United States. Electronic address: syamada@ucdavis.edu.
University of California, Davis · US

Funding

Identification of stretch-induced biotinylation at cadherin junctionsR03EB021636 · NIBIB · UNIVERSITY OF CALIFORNIA AT DAVIS · PI YAMADA, SOICHIRO · 2016 to 2017
$141k
NIBIB NIH HHS R03 EB021636
6 · The paper itself

Abstract

Protein-protein interactions are the molecular basis of cell signaling. Recently, proximity based biotin identification (BioID) has emerged as an alternative approach to traditional co-immunoprecipitation. In this protocol, a mutant biotin ligase promiscuously labels proximal binding partners with biotin, and resulting biotinylated proteins are purified using streptavidin conjugated beads. This approach does not require preservation of protein complexes in vitro, making it an ideal approach to identify transient or weak protein complexes. However, due to the high affinity bond between streptavidin and biotin, elution of biotinylated proteins from streptavidin conjugated beads requires harsh denaturing conditions, which are often incompatible with downstream processing. To effectively release biotinylated proteins bound to streptavidin conjugated beads, we designed a series of experiments to determine optimal binding and elution conditions. Interestingly, the concentrations of SDS and IGEPAL-CA630 during the incubation with streptavidin conjugated beads were the key to effective elution of biotinylated proteins using excess biotin and heating. This protocol provides an alternative method to isolate biotinylated proteins from streptavidin conjugated beads that is suitable for further downstream analysis.

Indexed as

AnimalsBiotinBiotinylationBlotting, WesternCarbon-Nitrogen LigasesDogsElectrophoresis, Polyacrylamide GelEscherichia coli ProteinsHot TemperatureImmunoprecipitationMadin Darby Canine Kidney CellsProteinsRecombinant ProteinsRepressor ProteinsSolubilityStreptavidinBiotinbirA protein, E coliCarbon-Nitrogen LigasesEscherichia coli ProteinsProteinsRecombinant ProteinsRepressor ProteinsStreptavidinBioIDBirAProtein purificationProximal biotinylationStreptavidinα-Catenin

Identifiers

PMID28986262
PMCPMC5693302
OpenAlexW2761938632

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.