Evidence map›Paper›PMID 28985478›Full record

ArticleSLAS discovery : advancing life sciences R & D2018

Alteration of RNA Splicing by Small-Molecule Inhibitors of the Interaction between NHP2L1 and U4.

Barthelemy Diouf, Wenwei Lin, Asli Goktug, Christy R R Grace, Michael Brett Waddell, Ju Bao, Youming Shao, Richard J Heath, Jie J Zheng, Anang A Shelat and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in SLAS discovery : advancing life sciences R & D, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
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  8. Phosphoproteomic response of cardiac endothelial cells to ischemia and ultrasound.Biochimica et biophysica acta. Proteins and proteomics · 2021
    Article
  9. Article
  10. New approaches to target RNA binding proteins.Current opinion in chemical biology · 2021
    Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Hypoxia-induced alternative splicing: the 11th Hallmark of Cancer.Journal of experimental & clinical cancer research : CR · 2020
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Barthelemy Diouf1 Hematological Malignancies Program, St. Jude Children's Research Hospital, Memphis, TN, USA.
Wenwei Lin3 Department of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN, USA.
Asli Goktug3 Department of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN, USA.
Christy R R Grace4 Department of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Michael Brett Waddell5 Molecular Interaction Analysis Shared Resource, St. Jude Children's Research Hospital, Memphis, TN, USA.
Ju Bao1 Hematological Malignancies Program, St. Jude Children's Research Hospital, Memphis, TN, USA.
Youming Shao6 Protein Production Facility, St. Jude Children's Research Hospital, Memphis, TN, USA.
Richard J Heath6 Protein Production Facility, St. Jude Children's Research Hospital, Memphis, TN, USA.
Jie J Zheng7 Stein Eye Institute and Department of Ophthalmology, David Geffen School of Medicine, UCLA, Los Angeles, CA, USA.
Anang A Shelat3 Department of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN, USA.
Mary V Relling1 Hematological Malignancies Program, St. Jude Children's Research Hospital, Memphis, TN, USA.
Taosheng Chen3 Department of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN, USA.
William E Evans1 Hematological Malignancies Program, St. Jude Children's Research Hospital, Memphis, TN, USA.
St. Jude Children's Research Hospital · USDoheny Eye Institute · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Vision Research Core at UCLAP30EY000331 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Gregory Darin Field, DAVID S WILLIAMS · 1985 to 2026
$16.8M
CPML - Project 3: Genome-wide Studies of Adverse EffectsP50GM115279 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI RELLING, MARY V · 2015 to 2019
$15.1M
PHARMACOGENOMICS OF CHILDHOOD LEUKEMIA (ALL)R37CA036401 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI EVANS, WILLIAM E · 1987 to 2014
$9.7M
PAARK4Kids-Pharmacogenomics of Anticancer Agents Research in ChildrenU01GM092666 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI RELLING, MARY V · 2010 to 2014
$8.9M
Pharmacogenomics of Childhood Leukemia ALLR01CA036401 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI EVANS, WILLIAM E · 1985 to 2019
$3.6M
NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA036401NCI NIH HHS R37 CA036401NEI NIH HHS P30 EY000331NIGMS NIH HHS P50 GM115279NIGMS NIH HHS U01 GM092666
6 · The paper itself

Abstract

Splicing is an important eukaryotic mechanism for expanding the transcriptome and proteome, influencing a number of biological processes. Understanding its regulation and identifying small molecules that modulate this process remain a challenge. We developed an assay based on time-resolved fluorescence resonance energy transfer (TR-FRET) to detect the interaction between the protein NHP2L1 and U4 RNA, which are two key components of the spliceosome. We used this assay to identify small molecules that interfere with this interaction in a high-throughput screening (HTS) campaign. Topotecan and other camptothecin derivatives were among the top hits. We confirmed that topotecan disrupts the interaction between NHP2L1 and U4 by binding to U4 and inhibits RNA splicing. Our data reveal new functions of known drugs that could facilitate the development of therapeutic strategies to modify splicing and alter gene function.

Indexed as

Fluorescence Resonance Energy TransferHEK293 CellsHigh-Throughput Screening AssaysHumansRibonucleoproteins, Small NuclearRNA, Small NuclearRNA SplicingSmall Molecule LibrariesSpliceosomesTopotecanRibonucleoproteins, Small NuclearRNA, Small NuclearSmall Molecule LibrariesSnu13 protein, humanTopotecanU4 small nuclear RNANHP2L1ScreeningsplicingU4

Identifiers

PMID28985478
PMCPMC5783296
OpenAlexW2763613845

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.