Evidence map›Paper›PMID 28984574›Full record

ArticleeLife2017

Ligand modulation of sidechain dynamics in a wild-type human GPCR.

Lindsay D Clark, Igor Dikiy, Karen Chapman, Karin Ej Rödström, James Aramini, Michael V LeVine, George Khelashvili, Søren Gf Rasmussen, Kevin H Gardner, Daniel M Rosenbaum

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 94 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Membrane mimetic-dependence of GPCR energy landscapes.Structure (London, England : 1993) · 2024
    Article
  8. Single-molecule visualization of human ACommunications biology · 2023
    Article
  9. Side-chain dynamics of the αProtein science : a publication of the Protein Society · 2023
    Article
  10. Membrane Mimetic-Dependence of GPCR Energy Landscapes.bioRxiv : the preprint server for biology · 2023
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. GPCR structural characterization by NMR spectroscopy in solution.Acta biochimica et biophysica Sinica · 2022
    Review
  18. Adenosine ABritish journal of pharmacology · 2022
    Review
  19. Review
  20. Slow conformational dynamics of the human AStructure (London, England : 1993) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Lindsay D Clark *Department of Biophysics, The University of Texas Southwestern Medical Center, Dallas, United States.ORCID https://orcid.org/0000-0001-6879-6883
Igor Dikiy *Structural Biology Initiative, CUNY Advanced Science Research Center, New York, United States.ORCID http://orcid.org/0000-0002-8155-7788
Karen ChapmanDepartment of Biophysics, The University of Texas Southwestern Medical Center, Dallas, United States.
Karin Ej RödströmDepartment of Neuroscience and Pharmacology, University of Copenhagen, Copenhagen, Denmark.
James AraminiStructural Biology Initiative, CUNY Advanced Science Research Center, New York, United States.
Michael V LeVineDepartment of Physiology and Biophysics, Weill Cornell Medical College, New York, United States.
George KhelashviliDepartment of Physiology and Biophysics, Weill Cornell Medical College, New York, United States.ORCID https://orcid.org/0000-0001-7235-8579
Søren Gf RasmussenDepartment of Neuroscience and Pharmacology, University of Copenhagen, Copenhagen, Denmark.
Kevin H GardnerStructural Biology Initiative, CUNY Advanced Science Research Center, New York, United States.ORCID http://orcid.org/0000-0002-8671-2556
Daniel M RosenbaumDepartment of Biophysics, The University of Texas Southwestern Medical Center, Dallas, United States.ORCID http://orcid.org/0000-0002-7174-4993
The Graduate Center, CUNY · USThe University of Texas Southwestern Medical Center · USCornell University · USUniversity of Copenhagen · DK

Funding

Structure of the Dopamine D2-Like Receptor Binding SitesR01MH054137 · NIMH · NEW YORK STATE PSYCHIATRIC INSTITUTE DBA RESEARCH FOUNDATION FOR MENTAL HYGIENE, INC · PI JAVITCH, JONATHAN A · 1995 to 2025
$12.0M
Summer Undergraduate Research Support - Ms. Anastasiia FisiukR01GM106239 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI GARDNER, KEVIN H · 2013 to 2024
$4.5M
Molecular mechanism of a master regulator of sterol homeostasisR01GM113050 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI ROSENBAUM, DANIEL · 2015 to 2019
$1.5M
NIGMS NIH HHS R01 GM106239NIGMS NIH HHS R01 GM113050NIMH NIH HHS R01 MH054137
6 · The paper itself

Abstract

GPCRs regulate all aspects of human physiology, and biophysical studies have deepened our understanding of GPCR conformational regulation by different ligands. Yet there is no experimental evidence for how sidechain dynamics control allosteric transitions between GPCR conformations. To address this deficit, we generated samples of a wild-type GPCR (A

Indexed as

Adenosine-5'-(N-ethylcarboxamide)Crystallography, X-RayHumansMagnetic Resonance SpectroscopyModels, MolecularProtein BindingProtein ConformationReceptor, Adenosine A2ATriazinesTriazolesAdenosine-5'-(N-ethylcarboxamide)Receptor, Adenosine A2ATriazinesTriazolesZM 241385adenosine receptorsallosterybiochemistrybiophysicsdynamicsGPCRligandsNMRstructural biology

Identifiers

PMID28984574
PMCPMC5650471
OpenAlexW2762693020

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.