Evidence map›Paper›PMID 28984203›Full record

ArticleBMC systems biology2017

System modeling reveals the molecular mechanisms of HSC cell cycle alteration mediated by Maff and Egr3 under leukemia.

Rudong Li, Yin Wang, Hui Cheng, Gang Liu, Tao Cheng, Yunlong Liu, Lei Liu

Open access · diamondAbstract read
In one paragraph

Article in BMC systems biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. CDK6 Inhibition: A Novel Approach in AML Management.International journal of molecular sciences · 2020
    Review
  6. CDK6 coordinatesBlood · 2019
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Rudong LiCenter for Computational Biology and Bioinformatics, Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Yin WangShanghai Public Health Clinical Center and Institutes of Biomedical Sciences, Fudan University, Shanghai, 200031, China.
Hui ChengInstitute of Hematology, Chinese Academy of Medical Sciences and Peking Union Medical College, Tianjin, 300020, China.
Gang LiuShanghai Center for Bioinformatics Technology, Shanghai, 201203, China.
Tao ChengInstitute of Hematology, Chinese Academy of Medical Sciences and Peking Union Medical College, Tianjin, 300020, China.
Yunlong LiuCenter for Computational Biology and Bioinformatics, Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Lei LiuShanghai Public Health Clinical Center and Institutes of Biomedical Sciences, Fudan University, Shanghai, 200031, China. liulei@fudan.edu.cn.
Chinese Academy of Medical Sciences & Peking Union Medical College · CNShanghai Center For Bioinformation Technology · CNIndiana University – Purdue University Indianapolis · USIndiana University School of MedicineShanghai Public Health Clinical Center · CN

Funding

Protective behavioral strategies and mental health: Reducing alcohol-related riskR21AA020104 · NIAAA · LOYOLA MARYMOUNT UNIVERSITY · PI LABRIE, JOSEPH W. · 2010 to 2011
$367k
NIAAA NIH HHS R21 AA020104
6 · The paper itself

Abstract

backgroundMolecular mechanisms of the functional alteration of hematopoietic stem cells (HSCs) in leukemic environment attract intensive research interests. As known in previous researches, Maff and Egr3 are two important genes having opposite functions on cell cycle; however, they are both highly expressed in HSCs under leukemia. Hence, exploring the molecular mechanisms of how the genes act on cell cycle will help revealing the functional alteration of HSCs.

resultsWe herein utilize the bioinformatic resources to computationally model the acting mechanisms of Maff and Egr3 on cell cycle. Using the data of functional experiments as reference, molecular acting mechanisms are optimally enumerated through model selection. The results are consolidated by evidences from gene sequence analysis, thus having enhanced the confidence of our pilot findings, which suggest that HSCs possibly undergo a "adaptation - suppression" process in response to the malignant environment of leukemia.

conclusionAs a pilot research, our results may provide valuable insights for further experimental studies. Meanwhile, our research method combining computational modeling and data from functional experiments can be worthwhile for knowledge discovery; and it can be generalized and extended to other biological/biomedical studies.

Indexed as

Models, BiologicalEarly Growth Response Protein 3Gene Expression Regulation, NeoplasticHematopoietic Stem CellsHumansLeukemiaMafF Transcription FactorSystems BiologyEarly Growth Response Protein 3MafF Transcription FactorHematopoietic stem cellsLeukemiaMaff and Egr3Model selectionSystem modeling

Identifiers

PMID28984203
PMCPMC5629552
OpenAlexW2762353132

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.