Evidence map›Paper›PMID 28983784›Full record

ArticlePathology oncology research : POR2019

Genetic Variations of DNA Repair Genes in Breast Cancer.

Asuman Özgöz, Kuyaş Hekimler Öztürk, Ayşegül Yükseltürk, Hale Şamlı, Zuhal Başkan, Fadime Mutlu İçduygu, Mehmet Bacaksız

Abstract read
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In one paragraph

Article in Pathology oncology research : POR, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 3 pooled it
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 3 syntheses or guidelines pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
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  15. Association of ERCC2 Gene Polymorphisms with Susceptibility to Diffuse Large B-Cell Lymphoma.Medical science monitor : international medical journal of experimental and clinical research · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 6 institutions in 1 country.

Asuman ÖzgözKastamonu School of Medicine, Department of Medical Genetics, Kastamonu University, Kuzeykent Mah, Orgeneral Atilla Ateş Paşa Cd. No: 19 C, 37200, Kastamonu, Turkey. biologistasu@gmail.com.
Kuyaş Hekimler ÖztürkSchool of Medicine, Department of Medical Genetics, Süleyman Demirel University, Isparta, Turkey.
Ayşegül YükseltürkFazıl Boyner Faculty of Health Sciences, Department of Nutrition and Dietetics, Kastamonu University, Kastamonu, Turkey.
Hale ŞamlıSchool of Veterinary Medicine, Department of Genetics, Uludag University, Bursa, Turkey.
Zuhal BaşkanSchool of Medicine, Department of Medical Oncology, Acıbadem University, Istanbul, Turkey.
Fadime Mutlu İçduyguSchool of Medicine, Department of Medical Genetics, Giresun University, Giresun, Turkey.
Mehmet BacaksızAlanya Çıplaklı Family Health Center, Alanya-Antalya, Turkey.
Kastamonu University · TRAcıbadem University · TRAlanya University · TRBursa Uludağ Üni̇versi̇tesi̇ · TRGiresun University · TRSüleyman Demirel University · TR

Funding

Kastamonu University Research Fund KÜBAP-01/2013-03
6 · The paper itself

Abstract

Genetic variations in DNA repair genes may affect DNA repair capacity therefore increase risk for cancer. In our study, we evaluted the relation between DNA repair gene polymorphisms XRCC1 rs1799782, rs25487, rs25489; XPC rs2228000, rs2228001; XPD rs1799793, rs13181; XRCC3 rs861539; RAD51B rs10483813, rs1314913 and breast cancer risk for 202 Turkish cases in total, in which 102 patients with breast cancer and 100 controls. Genotyping of the DNA samples was carried out by multiplex PCR and matrix-assisted laser desorption/ionization mass spectrometry with time of flight measurement (MALDI-TOF) using Sequenom MassARRAY 4 analyzer. Genotype and allele distributions were calculated between the groups. Odds ratios (ORs) and 95% confidence intervals (CIs) were reported. rs25487 AA genotype and A allele was found to be increased in the control group (respectively, OR 0.16 95% CI 0.02-1.06, p = 0.058; OR 1.55, 95% CI 1.01-2.36, p = 0.043) and rs861539 T allele was found to be decreased in the patient group (OR 1.53, 95% CI 1.01-2.30, p = 0.049). No association with breast cancer was found for the remaining SNPs. Our findings suggest that XRCC1 rs25487 AA genotype and A allele, XRCC3 rs861539 T allele may have protective effects in breast cancer for Turkish population.

Indexed as

Gene Expression Regulation, NeoplasticPolymorphism, Single NucleotideBiomarkers, TumorBreast NeoplasmsCase-Control StudiesDNA Repair EnzymesFemaleFollow-Up StudiesGenetic Predisposition to DiseaseGenotypeHumansLymphatic MetastasisMiddle AgedPrognosisBiomarkers, TumorDNA Repair EnzymesBreast cancerDNA damageDNA repairPolymorphism

Identifiers

PMID28983784
OpenAlexW2763941708

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.