Evidence map›Paper›PMID 28983088›Full record

ArticleScientific reports2017

Emergence and clonal spread of colistin resistance due to multiple mutational mechanisms in carbapenemase-producing Klebsiella pneumoniae in London.

Jonathan A Otter, Michel Doumith, Frances Davies, Siddharth Mookerjee, Eleonora Dyakova, Mark Gilchrist, Eimear T Brannigan, Kathleen Bamford, Tracey Galletly, Hugo Donaldson and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 61 citations in OpenAlex.

  1. Global prevalence of mutation in theFrontiers in microbiology · 2024
    Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Prevalence of Mutated Colistin-ResistantTropical medicine and infectious disease · 2022
    Review
  9. Article
  10. Article
  11. Review
  12. Dissemination ofFrontiers in microbiology · 2022
    Article
  13. Article
  14. The rise and the fall of aMicrobial genomics · 2021
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 1 country.

Jonathan A OtterNational Institute for Health Research Health Protection Research Unit (NIHR HPRU) in Healthcare Associated Infection and Antimicrobial Resistance at Imperial College London & Public Health England, Hammersmith Hospital, Du Cane Road, W12 0HS, London, UK.
Michel DoumithAntimicrobial Resistance and Healthcare Associated Infections (AMRHAI) Reference Unit, National Infection Service, Public Health England (PHE), 61 Colindale Avenue, London, NW9 5EQ, UK.
Frances DaviesImperial College Healthcare NHS Trust, St. Mary's Hospital, Praed Street, London, W2 1NY, UK.
Siddharth MookerjeeImperial College Healthcare NHS Trust, St. Mary's Hospital, Praed Street, London, W2 1NY, UK.
Eleonora DyakovaImperial College Healthcare NHS Trust, St. Mary's Hospital, Praed Street, London, W2 1NY, UK.
Mark GilchristImperial College Healthcare NHS Trust, St. Mary's Hospital, Praed Street, London, W2 1NY, UK.
Eimear T BranniganImperial College Healthcare NHS Trust, St. Mary's Hospital, Praed Street, London, W2 1NY, UK.
Kathleen BamfordImperial College Healthcare NHS Trust, St. Mary's Hospital, Praed Street, London, W2 1NY, UK.
Tracey GalletlyImperial College Healthcare NHS Trust, St. Mary's Hospital, Praed Street, London, W2 1NY, UK.
Hugo DonaldsonImperial College Healthcare NHS Trust, St. Mary's Hospital, Praed Street, London, W2 1NY, UK.
David M AanensenDepartment of Infectious Disease Epidemiology, School of Public Health, Imperial College London, London, UK.
Matthew J EllingtonNational Institute for Health Research Health Protection Research Unit (NIHR HPRU) in Healthcare Associated Infection and Antimicrobial Resistance at Imperial College London & Public Health England, Hammersmith Hospital, Du Cane Road, W12 0HS, London, UK.
Robert HillAntimicrobial Resistance and Healthcare Associated Infections (AMRHAI) Reference Unit, National Infection Service, Public Health England (PHE), 61 Colindale Avenue, London, NW9 5EQ, UK.
Jane F TurtonAntimicrobial Resistance and Healthcare Associated Infections (AMRHAI) Reference Unit, National Infection Service, Public Health England (PHE), 61 Colindale Avenue, London, NW9 5EQ, UK.ORCID 0000-0001-5652-6472
Katie L HopkinsNational Institute for Health Research Health Protection Research Unit (NIHR HPRU) in Healthcare Associated Infection and Antimicrobial Resistance at Imperial College London & Public Health England, Hammersmith Hospital, Du Cane Road, W12 0HS, London, UK.
Neil WoodfordNational Institute for Health Research Health Protection Research Unit (NIHR HPRU) in Healthcare Associated Infection and Antimicrobial Resistance at Imperial College London & Public Health England, Hammersmith Hospital, Du Cane Road, W12 0HS, London, UK.
Alison HolmesNational Institute for Health Research Health Protection Research Unit (NIHR HPRU) in Healthcare Associated Infection and Antimicrobial Resistance at Imperial College London & Public Health England, Hammersmith Hospital, Du Cane Road, W12 0HS, London, UK. alison.holmes@imperial.ac.uk.
Imperial College Healthcare NHS Trust · GBHammersmith Hospital · GBPublic Health England · GBImperial College London · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carbapenemase-producing Enterobacteriaceae (CPE) are emerging worldwide, limiting therapeutic options. Mutational and plasmid-mediated mechanisms of colistin resistance have both been reported. The emergence and clonal spread of colistin resistance was analysed in 40 epidemiologically-related NDM-1 carbapenemase producing Klebsiella pneumoniae isolates identified during an outbreak in a group of London hospitals. Isolates from July 2014 to October 2015 were tested for colistin susceptibility using agar dilution, and characterised by whole genome sequencing (WGS). Colistin resistance was detected in 25/38 (65.8%) cases for which colistin susceptibility was tested. WGS found that three potential mechanisms of colistin resistance had emerged separately, two due to different mutations in mgrB, and one due to a mutation in phoQ, with onward transmission of two distinct colistin-resistant variants, resulting in two sub-clones associated with transmission at separate hospitals. A high rate of colistin resistance (66%) emerged over a 10 month period. WGS demonstrated that mutational colistin resistance emerged three times during the outbreak, with transmission of two colistin-resistant variants.

Indexed as

AgedAged, 80 and overBacterial Proteinsbeta-LactamasesColistinDisease OutbreaksDrug Resistance, BacterialFemaleGenome, BacterialHumansKlebsiella InfectionsKlebsiella pneumoniaeLondonMaleMicrobial Sensitivity TestsMiddle AgedBacterial Proteinsbeta-LactamasescarbapenemaseColistin

Identifiers

PMID28983088
PMCPMC5629223
OpenAlexW2759877444

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.