Evidence map›Paper›PMID 28982794›Full record

ArticleScience (New York, N.Y.)2017

A high-coverage Neandertal genome from Vindija Cave in Croatia.

Kay Prüfer, Cesare de Filippo, Steffi Grote, Fabrizio Mafessoni, Petra Korlević, Mateja Hajdinjak, Benjamin Vernot, Laurits Skov, Pinghsun Hsieh, Stéphane Peyrégne and 26 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 328 papers.

0numbers the graph read from it
0cells of the map it votes in
328citing papers in PubMed
373.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

328 citing papers in PubMed, 755 citations in OpenAlex.

  1. Ancient DNA and Human Physiology.Physiology (Bethesda, Md.) · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Observational
  17. Article
  18. Article
  19. Article
  20. Article

268 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

36 authors at 9 institutions in 6 countries.

Kay PrüferMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany. pruefer@eva.mpg.de paabo@eva.mpg.de.ORCID 0000-0001-6242-3058
Cesare de FilippoMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.
Steffi GroteMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.
Fabrizio MafessoniMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.ORCID 0000-0003-4319-2076
Petra KorlevićMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.
Mateja HajdinjakMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.
Benjamin VernotMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.
Laurits SkovBioinformatics Research Centre, Aarhus University, DK-8000 Aarhus C, Denmark.ORCID 0000-0001-9582-0391
Pinghsun HsiehDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA.ORCID 0000-0001-8294-6227
Stéphane PeyrégneMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.
David ReherMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.
Charlotte HopfeMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.ORCID 0000-0003-0662-081X
Sarah NagelMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.
Tomislav MaricicMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.
Qiaomei FuKey Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China.
Christoph TheunertMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.
Rebekah RogersDepartment of Integrative Biology, University of California, Berkeley, CA 94720-3140, USA.ORCID 0000-0003-4678-4464
Pontus SkoglundBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Manjusha ChintalapatiMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.
Michael DannemannMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.ORCID 0000-0002-7076-8731
Bradley J NelsonDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA.ORCID 0000-0002-7739-7996
Felix M KeyMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.ORCID 0000-0003-2812-6636
Pavao RudanAnthropology Center of the Croatian Academy of Sciences and Arts, 10000 Zagreb, Croatia.
Željko KućanAnthropology Center of the Croatian Academy of Sciences and Arts, 10000 Zagreb, Croatia.
Ivan GušićAnthropology Center of the Croatian Academy of Sciences and Arts, 10000 Zagreb, Croatia.
Liubov V GolovanovaANO Laboratory of Prehistory 14 Linia 3-11, St. Petersburg 1990 34, Russia.
Vladimir B DoronichevANO Laboratory of Prehistory 14 Linia 3-11, St. Petersburg 1990 34, Russia.
Nick PattersonBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
David ReichBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Evan E EichlerDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA.ORCID 0000-0002-8246-4014
Montgomery SlatkinDepartment of Integrative Biology, University of California, Berkeley, CA 94720-3140, USA.
Mikkel H SchierupBioinformatics Research Centre, Aarhus University, DK-8000 Aarhus C, Denmark.ORCID 0000-0002-5028-1790
Aida M AndrésMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.
Janet KelsoMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.ORCID 0000-0002-3618-322X
Matthias MeyerMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.ORCID 0000-0002-4760-558X
Svante PääboMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany. pruefer@eva.mpg.de paabo@eva.mpg.de.ORCID 0000-0002-4670-6311
Max Planck Institute for Evolutionary Anthropology · DEBroad Institute · USCroatian Academy of Sciences and Arts · HRIntegra (United States) · USAarhus University · DKSaint Petersburg Mining University · RUUniversity of Washington · USChinese Academy of Sciences · CNHoward Hughes Medical Institute · US

Funding

Sequence and Assembly of Segmental DuplicationsR01HG002385 · NHGRI · UNIVERSITY OF WASHINGTON · PI Evan Eichler · 2001 to 2026
$13.3M
MODELS OF COMPLEX GENETIC SYSTEMSR01GM040282 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI SLATKIN, MONTGOMERY WILSON · 1988 to 2017
$4.4M
Population mixture in evolutionary and medical geneticsR01GM100233 · NIGMS · HARVARD MEDICAL SCHOOL · PI PATTERSON, NICK J, REICH, DAVID E · 2012 to 2019
$2.7M
European Research Council 694707Howard Hughes Medical InstituteNHGRI NIH HHS R01 HG002385NIGMS NIH HHS R01 GM040282NIGMS NIH HHS R01 GM100233
6 · The paper itself

Abstract

To date, the only Neandertal genome that has been sequenced to high quality is from an individual found in Southern Siberia. We sequenced the genome of a female Neandertal from ~50,000 years ago from Vindija Cave, Croatia, to ~30-fold genomic coverage. She carried 1.6 differences per 10,000 base pairs between the two copies of her genome, fewer than present-day humans, suggesting that Neandertal populations were of small size. Our analyses indicate that she was more closely related to the Neandertals that mixed with the ancestors of present-day humans living outside of sub-Saharan Africa than the previously sequenced Neandertal from Siberia, allowing 10 to 20% more Neandertal DNA to be identified in present-day humans, including variants involved in low-density lipoprotein cholesterol concentrations, schizophrenia, and other diseases.

Indexed as

Biological EvolutionAllelesAnimalsCavesCroatiaDNA, AncientGenomeHumansNeanderthalsDNA, Ancient

Identifiers

PMID28982794
PMCPMC6185897
OpenAlexW2762876887

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.