Evidence map›Paper›PMID 28981840›Full record

ArticleNucleic acids research2017

The siRNA suppressor RTL1 is redox-regulated through glutathionylation of a conserved cysteine in the double-stranded-RNA-binding domain.

Cyril Charbonnel, Adnan K Niazi, Emilie Elvira-Matelot, Elzbieta Nowak, Matthias Zytnicki, Anne de Bures, Edouard Jobet, Alisson Opsomer, Nahid Shamandi, Marcin Nowotny and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Reactive oxygen species signalling in plant stress responses.Nature reviews. Molecular cell biology · 2022
    Review
  5. Review
  6. Article
  7. Redox Components: Key Regulators of Epigenetic Modifications in Plants.International journal of molecular sciences · 2020
    Review
  8. Heat-Induced Oxidation of the Nuclei and Cytosol.Frontiers in plant science · 2020
    Article
  9. Thiol Based Redox Signaling in Plant Nucleus.Frontiers in plant science · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 2 countries.

Cyril CharbonnelCNRS, Laboratoire Génome et Développement des Plantes, UMR 5096, 66860 Perpignan, France.
Adnan K NiaziCNRS, Laboratoire Génome et Développement des Plantes, UMR 5096, 66860 Perpignan, France.
Emilie Elvira-MatelotInstitut Jean-Pierre Bourgin, UMR1318 INRA AgroParisTech CNRS, Université Paris-Saclay, 78000 Versailles, France.
Elzbieta NowakLaboratory of Protein Structure, International Institute of Molecular and Cell Biology, 02-109 Warsaw, Poland.
Matthias ZytnickiUMIAT, INRA UR-875, F-31326 Castanet-Tolosan, France.
Anne de BuresCNRS, Laboratoire Génome et Développement des Plantes, UMR 5096, 66860 Perpignan, France.
Edouard JobetCNRS, Laboratoire Génome et Développement des Plantes, UMR 5096, 66860 Perpignan, France.
Alisson OpsomerLaboratoire de Spectrométrie de Masse BioOrganique,Université de Strasbourg, CNRS, IPHC UMR 7178, 67037 Strasbourg, France.
Nahid ShamandiInstitut Jean-Pierre Bourgin, UMR1318 INRA AgroParisTech CNRS, Université Paris-Saclay, 78000 Versailles, France.
Marcin NowotnyLaboratory of Protein Structure, International Institute of Molecular and Cell Biology, 02-109 Warsaw, Poland.
Christine CarapitoLaboratoire de Spectrométrie de Masse BioOrganique,Université de Strasbourg, CNRS, IPHC UMR 7178, 67037 Strasbourg, France.
Jean-Philippe ReichheldCNRS, Laboratoire Génome et Développement des Plantes, UMR 5096, 66860 Perpignan, France.
Hervé VaucheretInstitut Jean-Pierre Bourgin, UMR1318 INRA AgroParisTech CNRS, Université Paris-Saclay, 78000 Versailles, France.
Julio Sáez-VásquezCNRS, Laboratoire Génome et Développement des Plantes, UMR 5096, 66860 Perpignan, France.
AgroParisTech · FRCentre National de la Recherche Scientifique · FRInternational Institute of Molecular and Cell Biology · PLLaboratoire Génome et Développement des Plantes · FRUniversité de Perpignan · FRUniversité de Strasbourg · FRInstitut Jean-Pierre Bourgin · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNase III enzymes cleave double stranded (ds)RNA. This is an essential step for regulating the processing of mRNA, rRNA, snoRNA and other small RNAs, including siRNA and miRNA. Arabidopsis thaliana encodes nine RNase III: four DICER-LIKE (DCL) and five RNASE THREE LIKE (RTL). To better understand the molecular functions of RNase III in plants we developed a biochemical assay using RTL1 as a model. We show that RTL1 does not degrade dsRNA randomly, but recognizes specific duplex sequences to direct accurate cleavage. Furthermore, we demonstrate that RNase III and dsRNA binding domains (dsRBD) are both required for dsRNA cleavage. Interestingly, the four DCL and the three RTL that carry dsRBD share a conserved cysteine (C230 in Arabidopsis RTL1) in their dsRBD. C230 is essential for RTL1 and DCL1 activities and is subjected to post-transcriptional modification. Indeed, under oxidizing conditions, glutathionylation of C230 inhibits RTL1 cleavage activity in a reversible manner involving glutaredoxins. We conclude that the redox state of the dsRBD ensures a fine-tune regulation of dsRNA processing by plant RNase III.

Indexed as

3' Untranslated RegionsAmino Acid SequenceArabidopsisArabidopsis ProteinsBase SequenceCysteineGlutathioneModels, MolecularNucleic Acid ConformationOxidation-ReductionProtein DomainsRepressor ProteinsRibonuclease IIIRNA-Binding MotifsRNA CleavageRNA, Double-Stranded3' Untranslated RegionsArabidopsis ProteinsCysteineGlutathioneRepressor ProteinsRibonuclease IIIRNA, Double-StrandedRNA, PlantRNA, Small InterferingRTL1 protein, ArabidopsisRTL1 RNase Three Like protein, Arabidopsis

Identifiers

PMID28981840
PMCPMC5714217
OpenAlexW2756103436

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.