Evidence map›Paper›PMID 28981720›Full record

ArticleProtein engineering, design & selection : PEDS2017

Selection of novel affinity-matured human chondroitin sulfate proteoglycan 4 antibody fragments by yeast display.

Xin Yu, Liang Qu, Darell D Bigner, Vidyalakshmi Chandramohan

Open access · bronzeAbstract read
In one paragraph

Article in Protein engineering, design & selection : PEDS, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Xin YuDepartment of Pathology, Duke University Medical Center, Durham, NC 27710, USA.
Liang QuDepartment of Pathology, Duke University Medical Center, Durham, NC 27710, USA.
Darell D BignerDepartment of Pathology, Duke University Medical Center, Durham, NC 27710, USA.
Vidyalakshmi ChandramohanDepartment of Pathology, Duke University Medical Center, Durham, NC 27710, USA.
Duke University Hospital · USDuke Medical Center · US

Funding

Vaccine Immunotoxin and Radioimmunotherapy of Primary and Metastatic CNS TumorsP01CA154291 · NCI · DUKE UNIVERSITY · PI BIGNER, DARELL D · 2012 to 2016
$14.5M
Oncolytic Polovirus, Immunotoxin, and Checkpoint Inhibitor Therapy of GliomasR35CA197264 · NCI · DUKE UNIVERSITY · PI BIGNER, DARELL D · 2015 to 2021
$6.1M
NCI NIH HHS P01 CA154291NCI NIH HHS R35 CA197264
6 · The paper itself

Abstract

Chondroitin sulfate proteoglycan 4 (CSPG4) is a promising target for cancer immunotherapy due to its high level of expression in a number of malignant tumors, and its essential role in tumor growth and progression. Clinical application of CSPG4-targeting immunotherapies is hampered by the lack of fully human high-affinity CSPG4 antibodies or antibody fragments. To overcome this limitation, we performed affinity maturation on a novel human CSPG4 single-chain Fv fragment (scFv) using the random mutagenesis approach and screened for improved variants from a yeast display library using a modified whole-cell panning method followed by fluorescence-activated cell sorting. After six rounds of panning and sorting, the top seven mutant scFvs were isolated and their binding affinities were characterized by flow cytometry and surface plasmon resonance. These highly specific, affinity-matured variants displayed nanomolar to picomolar binding affinities to the CSPG4 antigen. While each of the mutants harbored only two to six amino acid substitutions, they represented ~270-3000-fold improvement in affinity compared to the parental clone. Our study has generated affinity-matured scFvs for the development of antibody-based clinical therapeutics targeting CSPG4-expressing tumors.

Indexed as

Amino Acid SubstitutionAmino Acid SequenceAntibodies, MonoclonalAntibody AffinityCell Surface Display TechniquesChondroitin Sulfate Proteoglycan 4Chondroitin Sulfate ProteoglycansFlow CytometryGene ExpressionHEK293 CellsHumansKineticsMembrane ProteinsMutationProtein BindingRecombinant ProteinsAntibodies, MonoclonalChondroitin Sulfate Proteoglycan 4Chondroitin Sulfate ProteoglycansCSPG4 protein, humanMembrane ProteinsRecombinant ProteinsSingle-Chain Antibodiesaffinity maturationCSPG4random mutagenesisscFvyeast display

Identifiers

PMID28981720
PMCPMC5914443
OpenAlexW2741281204

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.