Evidence map›Paper›PMID 28981677›Full record

ArticleCarcinogenesis2017

Plasma DNA methylation marker and hepatocellular carcinoma risk prediction model for the general population.

Hui-Chen Wu, Hwai-I Yang, Qiao Wang, Chien-Jen Chen, Regina M Santella

Open access · bronzeAbstract read
In one paragraph

Article in Carcinogenesis, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 65 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Blood biomarkers of hepatocellular carcinoma: a critical review.Frontiers in cell and developmental biology · 2024
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Diagnostic performance ofClinical and experimental hepatology · 2022
    Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Hui-Chen WuDepartment of Environmental Health Sciences, Mailman School of Public Health of Columbia University, New York, NY 10032, USA.
Hwai-I YangGenomics Research Center, Academia Sinica, Taipei 11529, Taiwan.
Qiao WangDepartment of Environmental Health Sciences, Mailman School of Public Health of Columbia University, New York, NY 10032, USA.
Chien-Jen ChenGenomics Research Center, Academia Sinica, Taipei 11529, Taiwan.
Regina M SantellaDepartment of Environmental Health Sciences, Mailman School of Public Health of Columbia University, New York, NY 10032, USA.
Columbia University · USNational Taiwan University · TWNational Yang Ming University Hospital · TW

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Parisa Tehranifar · 1985 to 2026
$115.3M
True Metal fac coreP30ES009089 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MATTHEW S PERZANOWSKI · 1998 to 2026
$44.7M
BIOLOGICAL MONITORING FOR EXPOSURE TO AFLATOXINR01ES005116 · NIEHS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI SANTELLA, REGINA M · 1990 to 2014
$5.2M
NCI NIH HHS P30 CA013696NIEHS NIH HHS P30 ES009089NIEHS NIH HHS R01 ES005116
6 · The paper itself

Abstract

Metastases in the later stages of hepatocellular carcinoma (HCC) cause the majority of deaths associated with the disease, making early detection crucial to patient survival. Risk models assessing HCC risk in the general population can be used for risk stratification for further HCC surveillance, however, none have been validated externally. Methylation of circulating DNA shows potential for non-invasive diagnosis of HCC. We conducted a prospective case-control study nested within a community-based cohort. We measured methylation levels in six genes (CDKN2A, RASSF1A, STEAP4, TBX2, VIM and ZNF154) which were identified in our previous work, using pre-diagnostic plasma DNA from 237 HCC cases and 257 matched controls. We found TBX2 hypermethylation was associated with increased HCC risk, with ORs (95% CI) of 3.2 (1.8-6.0). The associations were mainly among high-risk subjects; among subjects infected with HBV/HCV, the OR (95% CI) of TBX2 methylation was 5.3 (2.2-12.7). Among subjects with high risk scores, the ORs (95% CIs) were 7.8 (1.5-38.6) for Wen-HCC model ≥16, 5.8 (2.2-15.5) for Hung-HCC ≥15 and 7.5 (2.2-26.0) for Michikawa-HCC ≥8. Adding TBX2 methylation improved the accuracy of risk models for a high-risk population, with the area under the curve (AUC) of 76% for Wen-HCC score with TBX2 methylation compared with 69% with Wen-HCC alone. The AUCs were 63% for Hung-HCC score plus TBX2 methylation, and 53% for Hung-HCC alone, 65% for Michikawa-HCC score plus TBX2 methylation and 58% for Michikawa-HCC alone. Our findings suggest the potential increase in risk assessment discrimination and accuracy from incorporation of DNA methylation.

Indexed as

DNA MethylationAdultAgedArea Under CurveBiomarkers, TumorCarcinoma, HepatocellularCase-Control StudiesCyclin-Dependent Kinase Inhibitor p16Cyclin-Dependent Kinase Inhibitor p18FemaleHumansKruppel-Like Transcription FactorsLiver NeoplasmsMaleMembrane ProteinsMiddle AgedBiomarkers, TumorCDKN2A protein, humanCyclin-Dependent Kinase Inhibitor p16Cyclin-Dependent Kinase Inhibitor p18Kruppel-Like Transcription FactorsMembrane ProteinsOxidoreductasesRASSF1 protein, humanSTEAP4 protein, humanT-Box Domain Protein 2T-Box Domain ProteinsTumor Suppressor ProteinsZNF154 protein, human

Identifiers

PMID28981677
PMCPMC5862336
OpenAlexW2744048910

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.