Evidence map›Paper›PMID 28981642›Full record

ArticleGenome biology and evolution2017

Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies.

Venkat Talla, Alexander Suh, Faheema Kalsoom, Vlad Dinca, Roger Vila, Magne Friberg, Christer Wiklund, Niclas Backström

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed, 1 pooled it
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 1 synthesis or guideline pooled it, 136 citations in OpenAlex.

  1. Speciation through chromosomal fusion and fission in Lepidoptera.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
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  18. The burst of satellite DNA in Leptidea wood white butterflies and their putative role in karyotype evolution.DNA research : an international journal for rapid publication of reports on genes and genomes · 2024
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10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Venkat TallaDepartment of Evolutionary Biology, Evolutionary Biology Centre (EBC), Uppsala University, Sweden.
Alexander SuhDepartment of Evolutionary Biology, Evolutionary Biology Centre (EBC), Uppsala University, Sweden.
Faheema KalsoomDepartment of Evolutionary Biology, Evolutionary Biology Centre (EBC), Uppsala University, Sweden.
Vlad DincaAnimal Biodiversity and Evolution Program, Institut de Biologia Evolutiva (CSIC-UPF), Barcelona, Spain.
Roger VilaAnimal Biodiversity and Evolution Program, Institut de Biologia Evolutiva (CSIC-UPF), Barcelona, Spain.
Magne FribergDepartment of Plant Ecology and Evolution, Evolutionary Biology Centre (EBC), Uppsala University, Sweden.
Christer WiklundDivision of Ecology, Department of Zoology, Stockholm University, Sweden.
Niclas BackströmDepartment of Evolutionary Biology, Evolutionary Biology Centre (EBC), Uppsala University, Sweden.
Uppsala University · SEInstitut de Biologia Evolutiva · ESStockholm University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Characterizing and quantifying genome size variation among organisms and understanding if genome size evolves as a consequence of adaptive or stochastic processes have been long-standing goals in evolutionary biology. Here, we investigate genome size variation and association with transposable elements (TEs) across lepidopteran lineages using a novel genome assembly of the common wood-white (Leptidea sinapis) and population re-sequencing data from both L. sinapis and the closely related L. reali and L. juvernica together with 12 previously available lepidopteran genome assemblies. A phylogenetic analysis confirms established relationships among species, but identifies previously unknown intraspecific structure within Leptidea lineages. The genome assembly of L. sinapis is one of the largest of any lepidopteran taxon so far (643 Mb) and genome size is correlated with abundance of TEs, both in Lepidoptera in general and within Leptidea where L. juvernica from Kazakhstan has considerably larger genome size than any other Leptidea population. Specific TE subclasses have been active in different Lepidoptera lineages with a pronounced expansion of predominantly LINEs, DNA elements, and unclassified TEs in the Leptidea lineage after the split from other Pieridae. The rate of genome expansion in Leptidea in general has been in the range of four Mb/Million year (My), with an increase in a particular L. juvernica population to 72 Mb/My. The considerable differences in accumulation rates of specific TE classes in different lineages indicate that TE activity plays a major role in genome size evolution in butterflies and moths.

Indexed as

DNA Transposable ElementsGenome, InsectGenome SizeAnimalsButterfliesFemaleMutationPhylogenyDNA Transposable Elementsbutterflygenome expansionLepidopteraLeptideapopulationtransposable elements

Identifiers

PMID28981642
PMCPMC5737376
OpenAlexW2746733269

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.