Evidence map›Paper›PMID 28980519›Full record

ArticleJournal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc2018

Exploring target-specific primer extension in combination with a bead-based suspension array for multiplexed detection and typing using Streptococcus suis as a model pathogen.

Fimme J van der Wal, René P Achterberg, Conny van Solt-Smits, Jan H W Bergervoet, Marjanne de Weerdt, Henk J Wisselink

Open access · bronzeAbstract read
In one paragraph

Article in Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 81% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Fimme J van der WalWageningen University & Research, Bioveterinary Research, Lelystad, The Netherlands (van der Wal, Achterberg, van Solt-Smits, Wisselink).
René P AchterbergWageningen University & Research, Bioveterinary Research, Lelystad, The Netherlands (van der Wal, Achterberg, van Solt-Smits, Wisselink).
Conny van Solt-SmitsWageningen University & Research, Bioveterinary Research, Lelystad, The Netherlands (van der Wal, Achterberg, van Solt-Smits, Wisselink).
Jan H W BergervoetWageningen University & Research, Bioveterinary Research, Lelystad, The Netherlands (van der Wal, Achterberg, van Solt-Smits, Wisselink).
Marjanne de WeerdtWageningen University & Research, Bioveterinary Research, Lelystad, The Netherlands (van der Wal, Achterberg, van Solt-Smits, Wisselink).
Henk J WisselinkWageningen University & Research, Bioveterinary Research, Lelystad, The Netherlands (van der Wal, Achterberg, van Solt-Smits, Wisselink).
Wageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We investigated the feasibility of an assay based on target-specific primer extension, combined with a suspension array, for the multiplexed detection and typing of a veterinary pathogen in animal samples, using Streptococcus suis as a model pathogen. A procedure was established for simultaneous detection of 6 S. suis targets in pig tonsil samples (i.e., 4 genes associated with serotype 1, 2, 7, or 9, the generic S. suis glutamate dehydrogenase gene [ gdh], and the gene encoding the extracellular protein factor [ epf]). The procedure was set up as a combination of protocols: DNA isolation from porcine tonsils, a multiplex PCR, a multiplex target-specific primer extension, and finally a suspension array as the readout. The resulting assay was compared with a panel of conventional PCR assays. The proposed multiplex assay can correctly identify the serotype of isolates and is capable of simultaneous detection of multiple targets in porcine tonsillar samples. The assay is not as sensitive as the current conventional PCR assays, but with the correct sampling strategy, the assay can be useful for screening pig herds to establish which S. suis serotypes are circulating in a pig population.

Indexed as

AnimalsFemaleMultiplex Polymerase Chain ReactionSerotypingStreptococcal InfectionsStreptococcus suisSwineSwine DiseasesBead-based suspension arraymultiplex PCRpigsserotypingStreptococcus suistarget-specific primer extension.

Identifiers

PMID28980519
PMCPMC5753849
OpenAlexW2762661588

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.