Evidence map›Paper›PMID 28980276›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2018

Quantitative Proteomic Analysis of Mass Limited Tissue Samples for Spatially Resolved Tissue Profiling.

Paul D Piehowski, Rui Zhao, Ronald J Moore, Geremy Clair, Charles Ansong

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
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  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Paul D PiehowskiBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Rui ZhaoEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.
Ronald J MooreBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Geremy ClairBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Charles AnsongBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA. Charles.ansong@pnnl.gov.

Funding

Equipment Supplement Request for a Research Resource for Ultra-sensitive High Throughput ProteomicsP41GM103493 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2012 to 2022
$22.6M
Center for Lung Development Imaging and OmicsU01HL122703 · NHLBI · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI ANSONG, CHARLES K, CARSON, JAMES PAUL · 2014 to 2018
$4.5M
NHLBI NIH HHS U01 HL122703NIGMS NIH HHS P41 GM103493
6 · The paper itself

Abstract

Traditionally, proteomic studies have been carried out on whole tissues or organs enabling the profiling of thousands of proteins within a single LC-MS analysis. A disadvantage of this approach is that proteomes generated from whole tissues are an "average" that represents a blend of cell types and distinct anatomical regions which can obscure important biological phenomena. Laser capture microdissection (LCM) is an elegant method that allows tissue features of interest, as small as a single cell, to be identified and isolated for downstream analysis. Herein we describe an approach that utilizes an immobilized enzyme reactor (IMER) coupled directly to nanoLC-MS/MS for highly sensitive, automated, quantitative proteomic analysis of the microscopic tissue specimens generated by LCM.

Indexed as

AnimalsEnzymes, ImmobilizedEquipment DesignHumansLaser Capture MicrodissectionProteomeProteomicsSample SizeSolid Phase ExtractionTandem Mass SpectrometryEnzymes, ImmobilizedProteomeImmobilized enzyme reactorLaser capture microdissectionMass spectrometryNanoLCNanoproteomicsProteomics

Identifiers

PMID28980276
PMCPMC6959974

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.