Evidence map›Paper›PMID 28978920›Full record

ArticleScientific reports2017

An archaeal RNA binding protein, FAU-1, is a novel ribonuclease related to rRNA stability in Pyrococcus and Thermococcus.

Yoshiki Ikeda, Yasuhiro Okada, Asako Sato, Tamotsu Kanai, Masaru Tomita, Haruyuki Atomi, Akio Kanai

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Archaeal RNA processing and regulation: expanding the functional landscape.Microbiology and molecular biology reviews : MMBR · 2025
    Review
  2. Review
  3. Article
  4. The 23S Ribosomal RNA FromFrontiers in microbiology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yoshiki IkedaInstitute for Advanced Biosciences, Keio University, Tsuruoka, 997-0017, Japan. yoshikiikeda0125@gmail.com.
Yasuhiro OkadaGraduate School of Engineering, Kyoto University, Kyoto, 615-8510, Japan.
Asako SatoInstitute for Advanced Biosciences, Keio University, Tsuruoka, 997-0017, Japan.
Tamotsu KanaiGraduate School of Engineering, Kyoto University, Kyoto, 615-8510, Japan.
Masaru TomitaInstitute for Advanced Biosciences, Keio University, Tsuruoka, 997-0017, Japan.
Haruyuki AtomiGraduate School of Engineering, Kyoto University, Kyoto, 615-8510, Japan.
Akio KanaiInstitute for Advanced Biosciences, Keio University, Tsuruoka, 997-0017, Japan.ORCID 0000-0002-6362-2419
Keio University · JPKyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribosome biogenesis and turnover are processes necessary for cell viability and proliferation, and many kinds of proteins are known to regulate these processes. However, many questions still remain, especially in the Archaea. Generally, several ribonucleases are required to process precursor rRNAs to their mature forms, and to degrade rRNAs for quality control. Here, we found that FAU-1, which is known to be an RNA binding protein, possesses an RNase activity against precursor 5S rRNA derived from P. furiosus and T. kodakarensis in the order Thermococcales in vitro. An in vitro analysis revealed that UA sequences in the upstream of 5S rRNA were preferentially degraded by addition of FAU-1. Moreover, a fau-1 gene deletion mutant of T. kodakarensis showed a delay of exponential phase, reduction of maximum cell number and significant changes in the nucleotide sequence lengths of its 5S, 16S, and 23S rRNAs in early exponential phase. Our results suggest that FAU-1 is a potential RNase involved in rRNA stability through maturation and/or degradation processes.

Indexed as

RNA StabilityArchaeal ProteinsBase SequenceCell SurvivalIonsMagnesiumMutationPyrococcusRibonucleasesRNA, ArchaealRNA-Binding ProteinsRNA, Ribosomal, 5SSequence Analysis, RNAThermococcusArchaeal ProteinsIonsMagnesiumRibonucleasesRNA, ArchaealRNA-Binding ProteinsRNA, Ribosomal, 5S

Identifiers

PMID28978920
PMCPMC5627344
OpenAlexW2759224897

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.