Evidence map›Paper›PMID 28978907›Full record

ArticleNature communications2017

Convergent evolution of Y chromosome gene content in flies.

Shivani Mahajan, Doris Bachtrog

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
9.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 81 citations in OpenAlex.

  1. Article
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  3. Article
  4. Article
  5. Article
  6. Article
  7. eLife · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. International journal of molecular sciences · 2022
    Review
  15. Article
  16. Fourth Report on Chicken Genes and Chromosomes 2022.Cytogenetic and genome research · 2022
    Review
  17. Article
  18. New Genes in theGenes · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Shivani MahajanDepartment of Integrative Biology, University of California Berkeley, Berkeley, California, 94720, USA.
Doris BachtrogDepartment of Integrative Biology, University of California Berkeley, Berkeley, California, 94720, USA. dbachtrog@berkeley.edu.
University of California, Berkeley · US

Funding

The formation of Heterochromatin on evolving Y chromosomesR01GM101255 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Doris Bachtrog · 2015 to 2026
$4.9M
The evolution of dosage compensation in DrosophilaR01GM076007 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BACHTROG, DORIS · 2006 to 2020
$3.6M
"Gene Trafficking on an Evolving X Chromosome in Drosophila"R01GM093182 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BACHTROG, DORIS · 2010 to 2017
$2.7M
NIGMS NIH HHS R01 GM076007NIGMS NIH HHS R01 GM093182NIGMS NIH HHS R01 GM101255
6 · The paper itself

Abstract

Sex-chromosomes have formed repeatedly across Diptera from ordinary autosomes, and X-chromosomes mostly conserve their ancestral genes. Y-chromosomes are characterized by abundant gene-loss and an accumulation of repetitive DNA, yet the nature of the gene repertoire of fly Y-chromosomes is largely unknown. Here we trace gene-content evolution of Y-chromosomes across 22 Diptera species, using a subtraction pipeline that infers Y genes from male and female genome, and transcriptome data. Few genes remain on old Y-chromosomes, but the number of inferred Y-genes varies substantially between species. Young Y-chromosomes still show clear evidence of their autosomal origins, but most genes on old Y-chromosomes are not simply remnants of genes originally present on the proto-sex-chromosome that escaped degeneration, but instead were recruited secondarily from autosomes. Despite almost no overlap in Y-linked gene content in different species with independently formed sex-chromosomes, we find that Y-linked genes have evolved convergent gene functions associated with testis expression. Thus, male-specific selection appears as a dominant force shaping gene-content evolution of Y-chromosomes across fly species.While X-chromosome gene content tends to be conserved, Y-chromosome evolution is dynamic and difficult to reconstruct. Here, Mahajan and Bachtrog use a subtraction pipeline to identify Y-linked genes in 22 Diptera species, revealing patterns of Y-chromosome gene-content evolution.

Indexed as

Evolution, MolecularAnimalsDipteraFemaleGenome, InsectMaleX ChromosomeY Chromosome

Identifiers

PMID28978907
PMCPMC5627270
OpenAlexW2760192776

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.