Evidence map›Paper›PMID 28978744›Full record

ArticleJournal of the Royal Society, Interface2017

A dynamically diluted alignment model reveals the impact of cell turnover on the plasticity of tissue polarity patterns.

Karl B Hoffmann, Anja Voss-Böhme, Jochen C Rink, Lutz Brusch

Open access · greenAbstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 7 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Karl B HoffmannCentre for Information Services and High Performance Computing, Technische Universität Dresden, Dresden, Germany.ORCID 0000-0002-3394-242X
Anja Voss-BöhmeCentre for Information Services and High Performance Computing, Technische Universität Dresden, Dresden, Germany.ORCID 0000-0001-6510-8694
Jochen C RinkMax Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.
Lutz BruschCentre for Information Services and High Performance Computing, Technische Universität Dresden, Dresden, Germany lutz.brusch@tu-dresden.de.ORCID 0000-0003-0137-5106
Max Planck Institute of Molecular Cell Biology and Genetics · DEHochschule für Technik und Wirtschaft Dresden – University of Applied Sciences · DETechnische Universität Dresden · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The polarization of cells and tissues is fundamental for tissue morphogenesis during biological development and regeneration. A deeper understanding of biological polarity pattern formation can be gained from the consideration of pattern reorganization in response to an opposing instructive cue, which we here consider using the example of experimentally inducible body axis inversions in planarian flatworms. We define a dynamically diluted alignment model linking three processes: entrainment of cell polarity by a global signal, local cell-cell coupling aligning polarity among neighbours, and cell turnover replacing polarized cells by initially unpolarized cells. We show that a persistent global orienting signal determines the final mean polarity orientation in this stochastic model. Combining numerical and analytical approaches, we find that neighbour coupling retards polarity pattern reorganization, whereas cell turnover accelerates it. We derive a formula for an effective neighbour coupling strength integrating both effects and find that the time of polarity reorganization depends linearly on this effective parameter and no abrupt transitions are observed. This allows us to determine neighbour coupling strengths from experimental observations. Our model is related to a dynamic 8-Potts model with annealed site-dilution and makes testable predictions regarding the polarization of dynamic systems, such as the planarian epithelium.

Indexed as

Models, BiologicalAnimalsCell PolarityEpitheliumPlanariansinteracting particle systemmathematical biologymean-field analysisplanar cell polarityplanariaregeneration

Identifiers

PMID28978744
PMCPMC5665830
OpenAlexW2761422444

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.