Evidence map›Paper›PMID 28978191›Full record

ArticleAmerican journal of epidemiology2017

Incorporation of Biological Knowledge Into the Study of Gene-Environment Interactions.

Marylyn D Ritchie, Joe R Davis, Hugues Aschard, Alexis Battle, David Conti, Mengmeng Du, Eleazar Eskin, M Daniele Fallin, Li Hsu, Peter Kraft and 6 more

Abstract read
In one paragraph

Article in American journal of epidemiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Gene-lifestyle interactions in the genomics of human complex traits.European journal of human genetics : EJHG · 2022
    Article
  8. Article
  9. Article
  10. Review
  11. Opportunities for Gene and Environment Research in Cancer: An Updated Review of NCI's Extramural Grant Portfolio.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2021
    Review
  12. Genome-Wide Gene-Diabetes and Gene-Obesity Interaction Scan in 8,255 Cases and 11,900 Controls from PanScan and PanC4 Consortia.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2020
    Article
  13. A Systematic Analysis of Interactions between Environmental Risk Factors and Genetic Variation in Susceptibility to Colorectal Cancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2020
    Article
  14. Review
  15. Article
  16. Review
  17. Review
  18. Article
  19. Opportunities and Challenges for Environmental Exposure Assessment in Population-Based Studies.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2017
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Marylyn D Ritchie
Joe R Davis
Hugues Aschard
Alexis Battle
David Conti
Mengmeng Du
Eleazar Eskin
M Daniele Fallin
Li Hsu
Peter Kraft
Jason H Moore
Brandon L Pierce
Stephanie A Bien
Duncan C Thomas
Peng Wei
Stephen B Montgomery

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Translational Research Support CoreP30ES007048 · NIEHS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ROB S MCCONNELL · 1996 to 2026
$46.4M
Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Trevor M Penning · 2006 to 2026
$35.3M
INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2M
Statistical Methods for Integrative Genomics in CancerP01CA196569 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Paul Marjoram · 2016 to 2026
$25.5M
Statistical Methods for Analysis of Massive Genetic and Genomic Data in Cancer ResearchR35CA197449 · NCI · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI XIHONG LIN · 2015 to 2026
$10.9M
Clinically Relevant Genome Variation DatabaseU01HG007436 · NHGRI · STANFORD UNIVERSITY · PI BUSTAMANTE, CARLOS DANIEL, PLON, SHARON E. · 2013 to 2016
$10.5M
Using Functional Genomics to Inform Gene Environment Interactions for Colorectal CancerR01CA201407 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GAUDERMAN, WILLIAM JAMES, LE MARCHAND, LOIC · 2016 to 2020
$9.6M
Use of Biomarkers in Diagnosis, Prognosis, Risk Prediction and Early Detection ofP01CA053996 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PRENTICE, ROSS L · 1991 to 2015
$9.4M
Cancer Prevention Trng-Nutrition, Exercise &GeneticsR25CA094880 · NCI · UNIVERSITY OF WASHINGTON · PI WHITE, EMILY · 2002 to 2016
$7.3M
Statistical Methods for the Spatio-Temporal Assessment of Social Disparities in CancerP01CA134294 · NCI · HARVARD SCHOOL OF PUBLIC HEALTH · PI HANEUSE, SEBASTIEN, HERNAN, MIGUEL · 2008 to 2017
$6.8M
Arsenic and the Human Genome: susceptibility and response to exposure Supplement 4R35ES028379 · NIEHS · UNIVERSITY OF CHICAGO · PI PIERCE, BRANDON LEE · 2017 to 2024
$5.6M
NCI NIH HHS P01 CA053996NCI NIH HHS P01 CA134294NCI NIH HHS P01 CA196569NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA140561NCI NIH HHS R01 CA169122NCI NIH HHS R01 CA189532NCI NIH HHS R01 CA195789NCI NIH HHS R01 CA201407NCI NIH HHS R25 CA094880NCI NIH HHS R35 CA197449NCI NIH HHS U01 CA188392NHGRI NIH HHS R01 HG008150NHGRI NIH HHS R21 HG007687NHGRI NIH HHS T32 HG000044NHGRI NIH HHS U01 HG007436NHGRI NIH HHS U01 HG009080NHGRI NIH HHS U01 HG009088NHLBI NIH HHS R01 HL116720NHLBI NIH HHS R21 HL126032NIAID NIH HHS R01 AI116794NIEHS NIH HHS P30 ES007048NIEHS NIH HHS P30 ES013508NIEHS NIH HHS R01 ES022282NIEHS NIH HHS R01 ES023834NIEHS NIH HHS R21 ES024834NIEHS NIH HHS R35 ES028379NIMH NIH HHS R01 MH101814NLM NIH HHS R01 LM010098
6 · The paper itself

Abstract

A growing knowledge base of genetic and environmental information has greatly enabled the study of disease risk factors. However, the computational complexity and statistical burden of testing all variants by all environments has required novel study designs and hypothesis-driven approaches. We discuss how incorporating biological knowledge from model organisms, functional genomics, and integrative approaches can empower the discovery of novel gene-environment interactions and discuss specific methodological considerations with each approach. We consider specific examples where the application of these approaches has uncovered effects of gene-environment interactions relevant to drug response and immunity, and we highlight how such improvements enable a greater understanding of the pathogenesis of disease and the realization of precision medicine.

Indexed as

Gene-Environment InteractionAnimalsDiseaseGenome-Wide Association StudyGenomicsHumansModels, AnimalSequence Analysis, RNAdata integrationfunctional genomicsgene-environment interactionmodel organisms

Identifiers

PMID28978191
PMCPMC5860556

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.