Evidence map›Paper›PMID 28977657›Full record

ArticleNucleic acids research2017

H2AX facilitates classical non-homologous end joining at the expense of limited nucleotide loss at repair junctions.

Yi-Li Feng, Ji-Feng Xiang, Si-Cheng Liu, Tao Guo, Guo-Fang Yan, Ye Feng, Na Kong, Hao-Dan Li, Yang Huang, Hui Lin and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
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  7. DPPA5A suppresses the mutagenic TLS and MMEJ pathways by modulating the cryptic splicing ofProceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Yi-Li FengSir Run Run Shaw Hospital, Zhejiang University, Hangzhou, Zhejiang 310019, China.
Ji-Feng XiangSir Run Run Shaw Hospital, Zhejiang University, Hangzhou, Zhejiang 310019, China.
Si-Cheng LiuSir Run Run Shaw Hospital, Zhejiang University, Hangzhou, Zhejiang 310019, China.
Tao GuoSir Run Run Shaw Hospital, Zhejiang University, Hangzhou, Zhejiang 310019, China.
Guo-Fang YanSir Run Run Shaw Hospital, Zhejiang University, Hangzhou, Zhejiang 310019, China.
Ye FengSir Run Run Shaw Hospital, Zhejiang University, Hangzhou, Zhejiang 310019, China.
Na KongSir Run Run Shaw Hospital, Zhejiang University, Hangzhou, Zhejiang 310019, China.
Hao-Dan LiShurui Tech Ltd, Hangzhou, Zhejiang 310005, China.
Yang HuangShurui Tech Ltd, Hangzhou, Zhejiang 310005, China.
Hui LinSir Run Run Shaw Hospital, Zhejiang University, Hangzhou, Zhejiang 310019, China.
Xiu-Jun CaiSir Run Run Shaw Hospital, Zhejiang University, Hangzhou, Zhejiang 310019, China.
An-Yong XieSir Run Run Shaw Hospital, Zhejiang University, Hangzhou, Zhejiang 310019, China.
Sir Run Run Shaw Hospital · CNZhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phosphorylated histone H2AX, termed 'γH2AX', mediates the chromatin response to DNA double strand breaks (DSBs) in mammalian cells. H2AX deficiency increases the numbers of unrepaired DSBs and translocations, which are partly associated with defects in non-homologous end joining (NHEJ) and contributing to genomic instability in cancer. However, the role of γH2AX in NHEJ of general DSBs has yet to be clearly defined. Here, we showed that despite little effect on overall NHEJ efficiency, H2AX deficiency causes a surprising bias towards accurate NHEJ and shorter deletions in NHEJ products. By analyzing CRISPR/Cas9-induced NHEJ and by using a new reporter for mutagenic NHEJ, we found that γH2AX, along with its interacting protein MDC1, is required for efficient classical NHEJ (C-NHEJ) but with short deletions and insertions. Epistasis analysis revealed that ataxia telangiectasia mutated (ATM) and the chromatin remodeling complex Tip60/TRRAP/P400 are essential for this H2AX function. Taken together, these data suggest that a subset of DSBs may require γH2AX-mediated short-range nucleosome repositioning around the breaks to facilitate C-NHEJ with loss of a few extra nucleotides at NHEJ junctions. This may prevent outcomes such as non-repair and translocations, which are generally more destabilizing to genomes than short deletions and insertions from local NHEJ.

Indexed as

DNA Breaks, Double-StrandedDNA End-Joining RepairAdaptor Proteins, Signal TransducingAnimalsAtaxia Telangiectasia Mutated ProteinsBase SequenceCell Cycle ProteinsCell LineCRISPR-Cas SystemsDNA-Activated Protein KinaseDNA-Binding ProteinsHistonesIntracellular Signaling Peptides and ProteinsMiceNucleotidesSequence DeletionAdaptor Proteins, Signal TransducingAtaxia Telangiectasia Mutated ProteinsAtm protein, mouseCell Cycle ProteinsDNA-Activated Protein KinaseDNA-Binding Proteinsgamma-H2AX protein, mouseHistonesIntracellular Signaling Peptides and ProteinsMDC1 protein, mouseNucleotidesXRCC4 protein, mouse

Identifiers

PMID28977657
PMCPMC5737864
OpenAlexW2744955681

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.