Evidence map›Paper›PMID 28977654›Full record

ArticleNucleic acids research2017

De novo design and synthesis of a 30-cistron translation-factor module.

Tyson R Shepherd, Liping Du, Josefine Liljeruhm, Samudyata, Jinfan Wang, Marcus O D Sjödin, Magnus Wetterhall, Tetsuya Yomo, Anthony C Forster

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
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  4. Reentrant DNA shells tune polyphosphate condensate size.bioRxiv : the preprint server for biology · 2023
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  5. 3D RNA-scaffolded wireframe origami.Nature communications · 2023
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  6. Cell-Free Display Techniques for Protein Evolution.Advances in biochemical engineering/biotechnology · 2023
    Article
  7. Article
  8. Review
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  10. Article
  11. Article
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  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Tyson R ShepherdDepartment of Cell and Molecular Biology, Uppsala University, Uppsala 751 36, Sweden.
Liping DuDepartment of Pharmacology, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Josefine LiljeruhmDepartment of Cell and Molecular Biology, Uppsala University, Uppsala 751 36, Sweden.
SamudyataDepartment of Cell and Molecular Biology, Uppsala University, Uppsala 751 36, Sweden.
Jinfan WangDepartment of Cell and Molecular Biology, Uppsala University, Uppsala 751 36, Sweden.
Marcus O D SjödinDepartment of Physical and Analytical Chemistry, Uppsala University, Uppsala 751 23, Sweden.
Magnus WetterhallDepartment of Physical and Analytical Chemistry, Uppsala University, Uppsala 751 23, Sweden.
Tetsuya YomoInstitute of Biology and Information Science, School of Computer Science and Software Engineering, School of Life Sciences, East China Normal University, Shanghai 200062, PR China.
Anthony C ForsterDepartment of Cell and Molecular Biology, Uppsala University, Uppsala 751 36, Sweden.
Uppsala University · SEEast China Normal University · CNVanderbilt University Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two of the many goals of synthetic biology are synthesizing large biochemical systems and simplifying their assembly. While several genes have been assembled together by modular idempotent cloning, it is unclear if such simplified strategies scale to very large constructs for expression and purification of whole pathways. Here we synthesize from oligodeoxyribonucleotides a completely de-novo-designed, 58-kb multigene DNA. This BioBrick plasmid insert encodes 30 of the 31 translation factors of the PURE translation system, each His-tagged and in separate transcription cistrons. Dividing the insert between three high-copy expression plasmids enables the bulk purification of the aminoacyl-tRNA synthetases and translation factors necessary for affordable, scalable reconstitution of an in vitro transcription and translation system, PURE 3.0.

Indexed as

Genes, SyntheticProtein BiosynthesisPlasmidsRibosomal ProteinsTranscription, GeneticRibosomal Proteins

Identifiers

PMID28977654
PMCPMC5737471
OpenAlexW2751861967

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.