Evidence map›Paper›PMID 28977313›Full record

ArticleRevista paulista de pediatria : orgao oficial da Sociedade de Pediatria de Sao Paulo

NEWBORN SCREENING FOR SEVERE COMBINED IMMUNODEFICIENCIES USING TRECS AND KRECS: SECOND PILOT STUDY IN BRAZIL.

Marilia Pyles P Kanegae, Lucila Akune Barreiros, Jusley Lira Sousa, Marco Antônio S Brito, Edgar Borges de Oliveira, Lara Pereira Soares, Juliana Themudo L Mazzucchelli, Débora Quiorato Fernandes, Sonia Marchezi Hadachi, Silvia Maia Holanda and 10 more

Open access · diamondAbstract readValidation Study
In one paragraph

Article in Revista paulista de pediatria : orgao oficial da Sociedade de Pediatria de Sao Paulo. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 2 pooled it
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 2 syntheses or guidelines pooled it, 33 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. First pilot study for newborn screening of severe T and B lymphopenias in ColombiaBiomedica : revista del Instituto Nacional de Salud · 2024
    Article
  7. Case report: A novelFrontiers in immunology · 2024
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  8. Article
  9. Article
  10. Article
  11. Future Perspectives of Newborn Screening for Inborn Errors of Immunity.International journal of neonatal screening · 2021
    Review
  12. Article
  13. First Year of TREC-Based National SCID Screening in Sweden.International journal of neonatal screening · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Translating Molecular Technologies into Routine Newborn Screening Practice.International journal of neonatal screening · 2020
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 11 institutions in 4 countries.

Marilia Pyles P KanegaeDepartamento de Imunologia, Universidade de São Paulo (USP), São Paulo, SP, Brasil.
Lucila Akune BarreirosDepartamento de Imunologia, Universidade de São Paulo (USP), São Paulo, SP, Brasil.
Jusley Lira SousaDepartamento de Imunologia, Universidade de São Paulo (USP), São Paulo, SP, Brasil.
Marco Antônio S BritoDepartamento de Imunologia, Universidade de São Paulo (USP), São Paulo, SP, Brasil.
Edgar Borges de OliveiraDepartamento de Imunologia, Universidade de São Paulo (USP), São Paulo, SP, Brasil.
Lara Pereira SoaresHospital Municipal Dr. José de Carvalho Florence, São José dos Campos, SP, Brasil.
Juliana Themudo L MazzucchelliDepartamento de Pediatria, Universidade Federal de São Paulo (UNIFESP), São Paulo, SP, Brasil.
Débora Quiorato FernandesHospital da Criança Santo Antonio, Porto Alegre, RS, Brasil.
Sonia Marchezi HadachiAPAE-SP, São Paulo, SP, Brasil.
Silvia Maia HolandaAmparo Maternal, São Paulo, SP, Brasil.
Flavia Alice T M GuimarãesHospital Regional da Asa Sul, Brasília, DF, Brasil.
Maura Aparecida P V V BoacninHospital Geral de Carapicuíba, Carapicuíba, SP, Brasil.
Marley Aparecida L PereiraHospital Municipal São Luiz Gonzaga, SP, Brasil.
Joaquina Maria C BuenoHospital Municipal Dr. José de Carvalho Florence, São José dos Campos, SP, Brasil.
Anete Sevciovic GrumachAmbulatório de Infecções de Repetição, Faculdade de Medicina do ABC, Santo André, SP, Brasil.
Regina Sumiko W Di GesuHospital da Criança Conceição, Porto Alegre, RS, Brasil.
Amélia Miyashiro N Dos SantosDepartamento de Pediatria, Universidade Federal de São Paulo (UNIFESP), São Paulo, SP, Brasil.
Newton BellesiClínica de Medicina Preventiva do Pará (CLIMEP), Belém, PA, Brasil.
Beatriz T Costa-CarvalhoDepartamento de Pediatria, Universidade Federal de São Paulo (UNIFESP), São Paulo, SP, Brasil.
Antonio Condino-NetoDepartamento de Imunologia, Universidade de São Paulo (USP), São Paulo, SP, Brasil.
Universidade de São Paulo · BRUniversidade Federal de São Paulo · BRHospital Amaral Carvalho · BRBrazilian Micro and Small Enterprises Support Service · BRCentro Universitário Amparense · BRFaculdade de Medicina do ABC · BRHospital de Santo António · PTHospital Geral de Fortaleza · BRHospital Nossa Senhora da Conceição · BROspedale San Luigi Gonzaga · ITSulzer (United Kingdom) · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveTo validate the quantification of T-cell receptor excision circles (TRECs) and kappa-deleting recombination excision circles (KRECs) by real-time polymerase chain reaction (qRT-PCR) for newborn screening of primary immunodeficiencies with defects in T and/or B cells in Brazil.

methodsBlood samples from newborns and controls were collected on filter paper. DNA was extracted and TRECs, and KRECs were quantified by a duplex real-time PCR. The cutoff values were determined by receiver operating characteristic curve analysis using SPSS software (IBM®, Armonk, NY, USA).

resultsAround 6,881 samples from newborns were collected and TRECs and KRECs were quantified. The TRECs values ranged between 1 and 1,006 TRECs/µL, with mean and median of 160 and 139 TRECs/µL, respectively. Three samples from patients with severe combined immunodeficiency (SCID) showed TRECs below 4/µL and a patient with DiGeorge syndrome showed undetectable TRECs. KRECs values ranged from 10 to 1,097 KRECs/µL, with mean and median of 130 and 108 KRECs/µL. Four patients with agammaglobulinemia had results below 4 KRECs/µL. The cutoff values were 15 TRECs/µL and 14 KRECs/µL and were established according to the receiver operating characteristic curve analysis, with 100% sensitivity for SCID and agammaglobulinemia detection, respectively.

conclusionsQuantification of TRECs and KRECs was able to diagnose children with T- and/or B-cell lymphopenia in our study, which validated the technique in Brazil and enabled us to implement the newborn screening program for SCID and agammaglobulinemia.

Indexed as

BrazilCross-Sectional StudiesDNAHumansInfantInfant, NewbornNeonatal ScreeningPilot ProjectsReal-Time Polymerase Chain ReactionReceptors, Antigen, B-CellSevere Combined ImmunodeficiencyDNAReceptors, Antigen, B-Cell

Identifiers

PMID28977313
PMCPMC5417806
OpenAlexW2604906085

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.