Evidence map›Paper›PMID 28976798›Full record

ArticleAutophagy2017

Conserved and unique features of the fission yeast core Atg1 complex.

Tamiza Nanji, Xu Liu, Leon H Chew, Franco K Li, Maitree Biswas, Zhong-Qiu Yu, Shan Lu, Meng-Qiu Dong, Li-Lin Du, Daniel J Klionsky and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Autophagy, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Degradation Mechanism of Autophagy-Related Proteins and Research Progress.International journal of molecular sciences · 2022
    Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Frontiers in cellular and infection microbiology · 2021
    Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Tamiza Nanjia Department of Biochemistry and Molecular Biology , The University of British Columbia , Vancouver , British Columbia , Canada.
Xu Liub Life Sciences Institute, Department of Molecular, Cellular, and Developmental Biology , University of Michigan , Ann Arbor , MI , USA.
Leon H Chewa Department of Biochemistry and Molecular Biology , The University of British Columbia , Vancouver , British Columbia , Canada.
Franco K Lia Department of Biochemistry and Molecular Biology , The University of British Columbia , Vancouver , British Columbia , Canada.
Maitree Biswasa Department of Biochemistry and Molecular Biology , The University of British Columbia , Vancouver , British Columbia , Canada.
Zhong-Qiu Yuc National Institute of Biological Sciences , Beijing, Beijing , China.
Shan Luc National Institute of Biological Sciences , Beijing, Beijing , China.
Meng-Qiu Dongc National Institute of Biological Sciences , Beijing, Beijing , China.
Li-Lin Duc National Institute of Biological Sciences , Beijing, Beijing , China.ORCID 0000-0002-1028-7397
Daniel J Klionskyb Life Sciences Institute, Department of Molecular, Cellular, and Developmental Biology , University of Michigan , Ann Arbor , MI , USA.ORCID 0000-0002-7828-8118
Calvin K Yipa Department of Biochemistry and Molecular Biology , The University of British Columbia , Vancouver , British Columbia , Canada.
University of British Columbia · CANational Institute of Biological Sciences, Beijing · CNUniversity of Michigan · US

Funding

ALTERNATIVE VACUOLAR TARGETING MECHANISMS IN YEASTR01GM053396 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KLIONSKY, DANIEL J. · 1995 to 2018
$12.1M
CIHR FDN-143228CIHR MOP-126126NIGMS NIH HHS R01 GM053396
6 · The paper itself

Abstract

Although the human ULK complex mediates phagophore initiation similar to the budding yeast Saccharomyces cerevisiae Atg1 complex, this complex contains ATG101 but not Atg29 and Atg31. Here, we analyzed the fission yeast Schizosaccharomyces pombe Atg1 complex, which has a subunit composition that resembles the human ULK complex. Our pairwise coprecipitation experiments showed that while the interactions between Atg1, Atg13, and Atg17 are conserved, Atg101 does not bind Atg17. Instead, Atg101 interacts with the HORMA domain of Atg13 and this enhances the stability of both proteins. We also found that S. pombe Atg17, the putative scaffold subunit, adopts a rod-shaped structure with no discernible curvature. Interestingly, S. pombe Atg17 binds S. cerevisiae Atg13, Atg29, and Atg31 in vitro, but it cannot complement the function of S. cerevisiae Atg17 in vivo. Furthermore, S. pombe Atg101 cannot substitute for the function of S. cerevisiae Atg29 and Atg31 in vivo. Collectively, our work generates new insights into the subunit organization and structural properties of an Atg101-containing Atg1/ULK complex.

Indexed as

Conserved SequenceMultiprotein ComplexesProtein BindingProtein SubunitsSaccharomyces cerevisiaeSchizosaccharomycesSchizosaccharomyces pombe ProteinsMultiprotein ComplexesProtein SubunitsSchizosaccharomyces pombe ProteinsAtg1Atg101Atg17cross-linking coupled to mass spectrometryelectron microscopy (EM)protein-protein interactionSchizosaccharomyces pombeULK1

Identifiers

PMID28976798
PMCPMC5788547
OpenAlexW2764341089

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.