Evidence map›Paper›PMID 28976047›Full record

ArticleMolecular microbiology2017

Target of rapamycin complex 1 and Tap42-associated phosphatases are required for sensing changes in nitrogen conditions in the yeast Saccharomyces cerevisiae.

Jinmei Li, Gonghong Yan, Sichi Liu, Tong Jiang, Mingming Zhong, Wenjie Yuan, Shaoxian Chen, Yin Zheng, Yong Jiang, Yu Jiang

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Effect of Amino Acids onFoods (Basel, Switzerland) · 2023
    Article
  2. Quiescence inAnnual review of genetics · 2022
    Review
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Jinmei LiDepartment of Pathophysiology, Southern Medical University, Guangzhou, China.
Gonghong YanDepartment of Pharmacology and Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA.
Sichi LiuDepartment of Cell Biology, Southern Medical University, Guangzhou, China.
Tong JiangDepartment of Pharmacology and Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA.
Mingming ZhongDepartment of Pharmacology and Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA.
Wenjie YuanSchool of Life Science and Biotechnology, Dalian University of Technology, Dalian, 116024, China.
Shaoxian ChenMedical Research Department, Guangdong General Hospital, Guangzhou, 510080, China.
Yin ZhengMedical and Healthcare Center, Hainan Provincial People's Hospital, Haikou, 570311, China.
Yong JiangDepartment of Pathophysiology, Southern Medical University, Guangzhou, China.
Yu JiangDepartment of Pharmacology and Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA.ORCID http://orcid.org/0000-0003-4746-1528
University of Pittsburgh · USSouthern Medical University · CNDalian University of Technology · CNGuangdong General Hospital · CNHainan General Hospital · CN

Funding

The Role of PP2A in Yeast Cell Cycle ProgressionR01GM068832 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JIANG, YU · 2005 to 2009
$1.1M
The role of arachidonic acid in estrogen mediated mTOR activationR21CA169186 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JIANG, YU · 2013 to 2014
$361k
NCI NIH HHS R21 CA169186NIGMS NIH HHS R01 GM068832
6 · The paper itself

Abstract

In yeast target of rapamycin complex 1 (TORC1) and Tap42-associated phosphatases regulate expression of genes involved in nitrogen limitation response and the nitrogen discrimination pathway. However, it remains unclear whether TORC1 and the phosphatases are required for sensing nitrogen conditions. Utilizing temperature sensitive mutants of tor2 and tap42, we examined the role of TORC1 and Tap42 in nuclear entry of Gln3, a key transcription factor in yeast nitrogen metabolism, in response to changes in nitrogen conditions. Our data show that TORC1 is essential for Gln3 nuclear entry upon nitrogen limitation and downshift in nitrogen quality. However, Tap42-associated phosphatases are required only under nitrogen limitation condition. In cells grown in poor nitrogen medium, the nitrogen permease reactivator kinase (Npr1) inhibits TORC1 activity and alters its association with Tap42, rendering Tap42-associated phosphatases unresponsive to nitrogen limitation. These findings demonstrate a direct role for TORC1 and Tap42-associated phosphatases in sensing nitrogen conditions and unveil an Npr1-dependent mechanism that controls TORC1 and the phosphatases in response to changes in nitrogen quality.

Indexed as

Adaptor Proteins, Signal TransducingCell Cycle ProteinsGene Expression Regulation, FungalMechanistic Target of Rapamycin Complex 1MutationNitrogenPhosphatidylinositol 3-KinasesPhosphoric Monoester HydrolasesProtein KinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsThermosensingTranscription FactorsAdaptor Proteins, Signal TransducingCell Cycle ProteinsGLN3 protein, S cerevisiaeMechanistic Target of Rapamycin Complex 1NitrogenNPR1 protein, S cerevisiaePhosphatidylinositol 3-KinasesPhosphoric Monoester HydrolasesProtein KinasesSaccharomyces cerevisiae ProteinsTAP42 protein, S cerevisiaeTOR2 protein, S cerevisiaeTranscription Factors

Identifiers

PMID28976047
PMCPMC5720920
OpenAlexW2761755010

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.